Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG243_RS07855 Genome accession   NZ_CP108392
Coordinates   1633969..1634970 (+) Length   333 a.a.
NCBI ID   WP_326633930.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01318     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1628969..1639970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG243_RS07835 (OG243_07870) - 1629671..1630177 (+) 507 WP_327239335.1 DNA starvation/stationary phase protection protein -
  OG243_RS07840 (OG243_07875) - 1630697..1631989 (+) 1293 WP_327239336.1 ABC transporter substrate-binding protein -
  OG243_RS07845 (OG243_07880) - 1632022..1632963 (+) 942 WP_327239337.1 sugar ABC transporter permease -
  OG243_RS07850 (OG243_07885) - 1632977..1633804 (+) 828 WP_326607084.1 carbohydrate ABC transporter permease -
  OG243_RS07855 (OG243_07890) cytR 1633969..1634970 (+) 1002 WP_326633930.1 LacI family DNA-binding transcriptional regulator Regulator
  OG243_RS07860 (OG243_07895) - 1635115..1637049 (+) 1935 WP_327239338.1 cellulase family glycosylhydrolase -
  OG243_RS07865 (OG243_07900) - 1637181..1639523 (+) 2343 WP_327239339.1 glycoside hydrolase family 3 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 34942.88 Da        Isoelectric Point: 6.8468

>NTDB_id=659974 OG243_RS07855 WP_326633930.1 1633969..1634970(+) (cytR) [Streptomyces sp. NBC_01318]
MAAAAGVSTAAVSQAVNGTGRISEATRRRVLDAAAELGWSPSASATALRRARTRTIALVVRRPTDVLGADPHFSELITGL
EGELAPRGYGLLLHLVADMAQESALYERLVAEGRIDGAVLTDARTDDPRPQLLRDLGLPAVLLGAPDPASPVPGVGLGQQ
GAGVREAAAHLLELGHRRLAYIAGPADLVHTRLRRAAFEEALAEAGLRPVAVRHTDFTEEAAVAVTEELLALPDRPTALV
FPNDSMAVCGIGTAQRSGLRVPGEVSVVGYDNLPLGRWLHPRLTTVDQQVQRVGAAAARTLLVRCGENVPPPVLDGRPRL
VVRESTGPVPSAS

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=659974 OG243_RS07855 WP_326633930.1 1633969..1634970(+) (cytR) [Streptomyces sp. NBC_01318]
GTGGCCGCCGCGGCCGGGGTCTCCACCGCTGCGGTCTCCCAGGCCGTCAACGGCACCGGCCGGATCTCGGAGGCCACCCG
CCGCCGGGTCCTGGACGCGGCGGCCGAACTGGGCTGGTCGCCCAGCGCGTCCGCCACGGCCCTGCGCAGGGCACGGACCC
GGACGATCGCGCTCGTCGTGCGACGCCCCACGGACGTGCTCGGTGCCGACCCGCACTTCAGCGAACTCATCACCGGTCTG
GAGGGCGAACTGGCTCCTCGGGGCTACGGTCTGCTGCTCCACCTGGTCGCCGACATGGCCCAGGAGAGCGCGCTGTACGA
ACGGCTGGTCGCCGAAGGCCGGATCGACGGTGCGGTGCTGACCGACGCGCGGACGGACGACCCGCGCCCGCAGCTGCTGC
GGGACCTCGGGCTGCCCGCCGTCCTGCTGGGCGCACCGGACCCCGCGTCGCCGGTGCCCGGCGTCGGCCTCGGGCAGCAG
GGCGCCGGTGTCCGCGAGGCCGCCGCGCACCTGCTGGAGCTCGGCCACCGGCGTCTCGCGTACATCGCGGGTCCGGCCGA
CCTGGTGCACACCAGGCTGCGTCGGGCCGCCTTCGAGGAGGCGCTCGCCGAGGCAGGTCTGCGGCCCGTCGCTGTCCGGC
ACACCGATTTCACGGAGGAGGCGGCCGTCGCCGTCACCGAGGAACTGCTCGCCCTGCCCGACCGGCCCACCGCTCTGGTG
TTCCCCAACGACTCCATGGCCGTCTGCGGCATCGGTACGGCCCAGCGCAGTGGGCTCCGGGTGCCCGGGGAAGTATCGGT
GGTGGGGTACGACAACCTGCCGCTCGGCCGCTGGCTGCACCCCCGGCTCACCACCGTGGACCAGCAGGTGCAAAGGGTCG
GTGCGGCCGCCGCCCGCACGCTGCTCGTCCGGTGCGGTGAGAACGTACCCCCGCCGGTCCTCGACGGACGCCCGCGCCTG
GTCGTACGGGAGTCGACCGGTCCCGTGCCGTCCGCGTCCTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-326)

Bacterial regulatory proteins, lacI family (LacI)

(2-42)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.398

100

0.36