Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG395_RS49945 Genome accession   NZ_CP108390
Coordinates   10908829..10909815 (-) Length   328 a.a.
NCBI ID   WP_327248820.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01320     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 10903829..10914815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG395_RS49925 (OG395_49895) - 10904573..10905451 (-) 879 WP_327248816.1 ABC transporter permease -
  OG395_RS49930 (OG395_49900) - 10905451..10906386 (-) 936 WP_327248817.1 ABC transporter permease -
  OG395_RS49935 (OG395_49905) - 10906383..10907567 (-) 1185 WP_327248818.1 ABC transporter ATP-binding protein -
  OG395_RS49940 (OG395_49910) - 10907564..10908775 (-) 1212 WP_327248819.1 extracellular solute-binding protein -
  OG395_RS49945 (OG395_49915) cytR 10908829..10909815 (-) 987 WP_327248820.1 LacI family DNA-binding transcriptional regulator Regulator

Sequence

Protein


Download         Length: 328 a.a.        Molecular weight: 34811.19 Da        Isoelectric Point: 6.2724

>NTDB_id=659958 OG395_RS49945 WP_327248820.1 10908829..10909815(-) (cytR) [Streptomyces sp. NBC_01320]
MAVTIRDVAKAAGVSASTVSRALSLPDIVDPSTRERVLRAADQLGYQPNRAARGLITGRTGNLGLIVPDLANPFFPMVIK
GIQAQAMDADYAVFLADSDEKPALEIGLVRALAVQVDGIILCSPRMSDAELREAAGCVPVVLANRRSGLLPASLVDNAGG
LREAVDHLVALGHRRIGFIAGPRSSWSSSERLRALRAAVEAVRVELVEIGNFAPQFEGGVAATDATLASDITAVITYNDL
MALGLIQTLASRGIEVPRRLSVIGIDDIPTSAMVHPSLTTLYVPKEQVGRVSVDLMVQLLGDPQADARPQRELPTRLIVR
NTTTVPPL

Nucleotide


Download         Length: 987 bp        

>NTDB_id=659958 OG395_RS49945 WP_327248820.1 10908829..10909815(-) (cytR) [Streptomyces sp. NBC_01320]
ATGGCAGTAACCATCCGTGACGTTGCGAAGGCAGCCGGCGTCTCAGCTTCCACAGTGTCACGAGCACTGTCGCTGCCCGA
CATCGTCGACCCCAGCACCCGCGAGCGGGTGCTGAGGGCCGCCGACCAGCTGGGCTACCAGCCCAACCGGGCGGCACGCG
GACTGATCACCGGACGCACCGGCAACCTGGGGCTGATCGTCCCCGACCTGGCCAACCCCTTCTTCCCCATGGTTATCAAG
GGGATCCAGGCGCAGGCCATGGATGCCGACTACGCGGTCTTCCTCGCCGACAGCGACGAGAAGCCCGCCCTCGAAATCGG
TCTGGTGCGCGCCCTGGCCGTACAGGTCGACGGCATCATCCTGTGCTCTCCCCGGATGTCCGACGCCGAGCTTCGCGAGG
CTGCTGGATGCGTACCCGTCGTCCTGGCCAACCGGCGCTCCGGACTGCTGCCCGCCAGCCTGGTGGACAACGCCGGCGGC
CTGCGCGAGGCGGTCGATCACCTCGTCGCGCTCGGCCACCGCCGGATCGGTTTCATCGCCGGCCCGCGTTCCAGCTGGTC
GAGCAGCGAGCGGCTGCGCGCGCTGCGGGCGGCCGTCGAGGCGGTACGGGTGGAGCTGGTGGAGATCGGCAACTTCGCCC
CGCAGTTCGAGGGCGGTGTCGCGGCAACCGACGCCACACTCGCCTCCGACATCACCGCCGTCATCACGTACAACGACCTG
ATGGCACTGGGGCTCATCCAGACCCTGGCCTCCCGCGGCATCGAGGTGCCGCGACGGTTGAGCGTCATCGGCATCGACGA
CATCCCCACGTCTGCAATGGTGCACCCCTCGCTCACCACCCTCTACGTTCCCAAGGAGCAAGTCGGGCGCGTGTCCGTCG
ATCTCATGGTGCAGCTACTGGGCGATCCCCAGGCCGACGCCCGCCCGCAGCGGGAGCTTCCCACCAGGCTGATCGTCCGC
AACACCACCACCGTTCCCCCCCTTTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(4-49)

Periplasmic binding protein-like domain (Peripla_BP_3)

(165-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.527

100

0.372