Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   MK801_RS00590 Genome accession   NZ_CP092748
Coordinates   115676..116704 (+) Length   342 a.a.
NCBI ID   WP_057720874.1    Uniprot ID   -
Organism   Lactococcus lactis strain 17M1     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 110676..121704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MK801_RS00570 (MK801_00570) lmrP 111906..113132 (+) 1227 WP_254255595.1 multidrug efflux MFS transporter LmrP -
  MK801_RS00575 (MK801_00575) - 113214..114434 (+) 1221 WP_139008920.1 MFS transporter -
  MK801_RS00580 (MK801_00580) rsmD 114605..115144 (+) 540 WP_057720873.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  MK801_RS00585 (MK801_00585) coaD 115192..115689 (+) 498 WP_010906348.1 pantetheine-phosphate adenylyltransferase -
  MK801_RS00590 (MK801_00590) sepM 115676..116704 (+) 1029 WP_057720874.1 SepM family pheromone-processing serine protease Regulator
  MK801_RS00595 (MK801_00595) - 116825..117682 (+) 858 WP_254255596.1 transcriptional regulator -
  MK801_RS00600 (MK801_00600) - 117785..118711 (+) 927 WP_240664880.1 radical SAM protein -
  MK801_RS00605 (MK801_00605) - 118708..119907 (+) 1200 WP_240664878.1 MFS transporter -
  MK801_RS00610 (MK801_00610) - 119900..120727 (+) 828 WP_254255597.1 radical SAM protein -
  MK801_RS00615 (MK801_00615) - 120724..120933 (+) 210 WP_003132661.1 hypothetical protein -
  MK801_RS00620 (MK801_00620) - 120920..121417 (+) 498 WP_038602414.1 nitroreductase family protein -

Sequence

Protein


Download         Length: 342 a.a.        Molecular weight: 37363.99 Da        Isoelectric Point: 9.9183

>NTDB_id=659944 MK801_RS00590 WP_057720874.1 115676..116704(+) (sepM) [Lactococcus lactis strain 17M1]
MKKNKKINPKLKWGISIGLIVVALLALFYPTSYYVEMPGTTEPLGKMVKVEGKKDEHKGDFFLTTVQIARANLATMIYSH
FNSFTSIYSEQEMTGGLNDAQFNRVNQFYMETAQNTAIYQAFKLANKPYELKYEGVYVLDIAKNSTFKNKLELADTITAV
NGQQFTSSADMIAYVSKQKVGDTVTIEYTRIDGTKHKSTGKYIKIANGKTGIGISLVDHTEVVTTPKVTVNAGSIGGPSA
GMMFTLEIYSQLTGKDLRNGREIAGTGTIEHDGSIGQIGGVDKKVATASKEGAKVFLVPDSGTKKESSNNYLGAKAAAKK
LKTKMKIVPVKTIQDALDYLEK

Nucleotide


Download         Length: 1029 bp        

>NTDB_id=659944 MK801_RS00590 WP_057720874.1 115676..116704(+) (sepM) [Lactococcus lactis strain 17M1]
ATGAAAAAAAATAAAAAAATTAATCCCAAATTAAAATGGGGAATCTCGATTGGTCTAATTGTTGTTGCCCTTTTAGCTTT
ATTTTATCCAACAAGTTACTATGTGGAAATGCCCGGAACAACCGAGCCTTTAGGAAAAATGGTCAAAGTTGAAGGCAAAA
AAGATGAACATAAAGGTGATTTTTTCCTGACGACTGTCCAAATTGCACGAGCAAATCTTGCTACAATGATTTACAGCCAT
TTTAATAGTTTTACAAGCATTTACAGTGAGCAAGAAATGACTGGTGGACTTAACGACGCACAGTTCAACCGTGTCAACCA
GTTTTACATGGAAACGGCACAGAATACAGCGATTTATCAAGCTTTTAAATTAGCTAATAAACCTTATGAACTTAAATATG
AAGGCGTTTATGTCCTTGATATTGCCAAAAATTCGACCTTTAAAAATAAGCTAGAACTTGCAGATACGATTACAGCAGTC
AATGGTCAACAGTTTACATCAAGTGCCGACATGATTGCTTATGTTTCCAAACAAAAAGTCGGTGATACAGTAACGATTGA
ATACACGAGAATTGACGGCACAAAGCACAAGTCAACTGGCAAATACATCAAAATTGCTAATGGAAAAACAGGAATTGGGA
TCAGCCTAGTTGACCATACTGAAGTCGTGACGACTCCAAAAGTTACTGTCAACGCGGGTTCAATCGGTGGTCCCTCTGCG
GGGATGATGTTTACACTAGAAATTTACAGTCAGTTGACAGGAAAAGATTTGCGAAACGGTCGCGAAATTGCTGGAACTGG
AACGATTGAACATGACGGAAGCATTGGCCAAATCGGCGGTGTTGATAAAAAAGTAGCCACAGCGAGCAAAGAAGGGGCAA
AGGTCTTCTTAGTGCCTGACTCAGGCACCAAAAAGGAAAGTAGCAACAATTACCTTGGAGCCAAAGCCGCAGCTAAAAAA
CTAAAAACGAAGATGAAAATCGTTCCCGTCAAAACTATTCAGGACGCTTTAGATTATTTAGAAAAATAA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(198-338)

PDZ domain (PDZ_2)

(134-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

48.696

100

0.491