Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG395_RS19690 Genome accession   NZ_CP108390
Coordinates   4370550..4371761 (-) Length   403 a.a.
NCBI ID   WP_327244135.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01320     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4365550..4376761
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG395_RS19670 (OG395_19620) - 4365880..4366218 (-) 339 WP_069170469.1 P-II family nitrogen regulator -
  OG395_RS19675 (OG395_19625) - 4366215..4367570 (-) 1356 WP_266981048.1 ammonium transporter -
  OG395_RS19680 (OG395_19630) - 4367927..4369402 (-) 1476 WP_327244133.1 hypothetical protein -
  OG395_RS19685 (OG395_19635) - 4369823..4370470 (+) 648 WP_327244134.1 bifunctional DNA primase/polymerase -
  OG395_RS19690 (OG395_19640) pilA 4370550..4371761 (-) 1212 WP_327244135.1 signal recognition particle-docking protein FtsY Machinery gene
  OG395_RS19695 (OG395_19645) - 4371871..4373262 (+) 1392 WP_327244136.1 cytosine permease -
  OG395_RS19700 (OG395_19650) - 4373321..4374280 (+) 960 WP_327244137.1 LLM class flavin-dependent oxidoreductase -
  OG395_RS19705 (OG395_19655) - 4374360..4375778 (-) 1419 WP_327244138.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 42297.44 Da        Isoelectric Point: 4.4959

>NTDB_id=659895 OG395_RS19690 WP_327244135.1 4370550..4371761(-) (pilA) [Streptomyces sp. NBC_01320]
MEFVILAVVIAALVVAGLISGLVVSGRKKRQLPPAPSSTPTITPAEPHVGEEAEPPREEPRRTIEEAGLPGVEAPAEEAP
AVAEPVAPAVPALEIPEPTAGRLVRLRARLARSQSTLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLR
ERVRVLGTRTPEGLRTLLREELLTLLGTDFDRAVKTESGVDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAAD
TFRAAATEQLQTWGERVGARTVRGPEGGDPASVAFEAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPL
DEILLVLDATTGQNGLVQARVFAEVVDVTGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDAL
IGD

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=659895 OG395_RS19690 WP_327244135.1 4370550..4371761(-) (pilA) [Streptomyces sp. NBC_01320]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCGCCCTGGTCGTGGCCGGCCTGATCAGCGGGCTCGTGGTCAGCGGCCG
TAAGAAGAGGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCATCACTCCCGCCGAACCGCATGTCGGCGAGGAAGCCG
AGCCACCGCGCGAGGAACCGCGCCGCACCATCGAGGAGGCCGGTCTTCCCGGCGTCGAGGCTCCCGCCGAGGAAGCCCCG
GCAGTCGCTGAGCCGGTGGCGCCCGCAGTCCCCGCGCTGGAGATCCCGGAGCCCACCGCCGGCCGTCTCGTACGGCTGCG
CGCCCGGCTCGCCCGCTCGCAGAGCACCCTCGGCAAGGGACTGCTCACGCTCCTGTCCCGCGACAACCTCGACGAGGACA
CCTGGGAGGAGATCGAGGACACCCTCCTCACCGCCGATGTCGGCGTCGCCCCCACCCAGGAGCTGGTGGAGCGGCTCCGC
GAGCGCGTCCGTGTCCTCGGGACCCGTACCCCCGAGGGGCTGCGGACCCTGCTGCGCGAGGAGCTCCTCACCTTGCTCGG
CACCGACTTCGACCGTGCGGTCAAGACGGAGAGCGGCGTCGACACGCCCGGTGTCGTGATGGTCGTCGGCGTCAACGGCA
CCGGCAAGACCACCACCACGGGCAAGCTGGCCCGAGTCCTCGTCGCCGACGGCCGCAGCGTCGTGCTCGGCGCGGCCGAC
ACCTTCCGTGCCGCCGCCACCGAACAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCGCGGACCCGAGGG
CGGCGACCCGGCGTCGGTCGCCTTCGAGGCGGTGAAGGAAGGCATCGCCGAAGGCGCCGATGTCGTCCTCATCGACACCG
CCGGCCGGCTGCACACCAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTCGAGAAGCACGGCCCGCTC
GACGAGATCCTGCTCGTCCTCGACGCCACGACCGGGCAGAACGGCCTGGTTCAGGCACGGGTGTTCGCCGAGGTCGTCGA
CGTCACCGGCATCGTCCTCACCAAGCTGGACGGTACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAACTGGGTG
TACCGGTGAAGCTCGTGGGTCTCGGCGAGGGACCGGACGACCTGGCTCCGTTCGAGCCGGAGGCGTTCGTCGACGCACTG
ATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(204-401)

SRP54-type protein, helical bundle domain (SRP54_N)

(117-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.742

92.308

0.395