Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG395_RS18800 Genome accession   NZ_CP108390
Coordinates   4155202..4155996 (+) Length   264 a.a.
NCBI ID   WP_266980763.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01320     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4150202..4160996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG395_RS18785 (OG395_18740) - 4150437..4150973 (+) 537 WP_327244001.1 TerD family protein -
  OG395_RS18790 (OG395_18745) - 4151072..4153975 (-) 2904 WP_327244002.1 vitamin B12-dependent ribonucleotide reductase -
  OG395_RS18795 (OG395_18750) nrdR 4154137..4154649 (-) 513 WP_327244003.1 transcriptional regulator NrdR -
  OG395_RS18800 (OG395_18755) dinR/lexA 4155202..4155996 (+) 795 WP_266980763.1 transcriptional repressor LexA Regulator
  OG395_RS18805 (OG395_18760) - 4156114..4158084 (-) 1971 WP_327244004.1 ATP-dependent DNA helicase -
  OG395_RS18810 (OG395_18765) - 4158123..4159994 (-) 1872 WP_327244005.1 IucA/IucC family siderophore biosynthesis protein -
  OG395_RS18815 (OG395_18770) - 4160055..4160789 (-) 735 WP_327244006.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28609.35 Da        Isoelectric Point: 7.4239

>NTDB_id=659890 OG395_RS18800 WP_266980763.1 4155202..4155996(+) (dinR/lexA) [Streptomyces sp. NBC_01320]
MTTTADSATITAQDRSQSRLQPVHAMNDSVTNTEGPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSTQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
SAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=659890 OG395_RS18800 WP_266980763.1 4155202..4155996(+) (dinR/lexA) [Streptomyces sp. NBC_01320]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGAGCCGACTCCAGCCGGTGCATGCCATGAA
TGACTCAGTCACGAACACGGAGGGGCCGGAGCCGGCACGACCGGCACGCTCGCTCCCCGGCCGACCTCCAGGCATCCGAG
CGGACAGCTCGGGGCTCACGGACCGCCAACGGCGCGTGATCGAGGTCATCCGGGATTCCGTGCAACGCCGGGGATACCCG
CCATCGATGCGGGAGATCGGTCAGGCGGTGGGCCTGTCCAGCACGTCCTCCGTCGCCCATCAGCTGATGGCCCTGGAGCG
CAAGGGCTTCCTGCGCCGCGACCCGCACCGGCCCCGGGCGTACGAGGTCCGTGGTTCGGATCAGCCCAGCACGCAGCCGA
CCGATACGACCGGCAAGCCCGCGGCATCGTACGTACCGCTCGTCGGGCGGATCGCAGCCGGTGGCCCGATCCTTGCCGAA
GAATCGGTCGAGGACGTCTTTCCCCTCCCCCGCCAGCTGGTCGGGGACGGCGAGCTGTTCGTTCTGAAGGTCGTCGGCGA
CTCGATGATCGAGGCGGCGATCTGTGACGGCGACTGGGTCACCGTCCGCCGTCAGCCCGTAGCGGAGAACGGCGACATCG
TGGCCGCAATGCTGGATGGCGAGGCCACCGTCAAGCGCTTCAAGCGGGAGGATGGCCATGTATGGCTGCTCCCGCACAAC
TCCGCGTACCAGCCGATCCCTGGCGACGAGGCAACCATCCTCGGCAAGGTCGTGGCGGTGCTGCGGCGGGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.226

80.303

0.371