Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG395_RS13280 Genome accession   NZ_CP108390
Coordinates   2836034..2837077 (+) Length   347 a.a.
NCBI ID   WP_327243100.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01320     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2831034..2842077
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG395_RS13260 (OG395_13210) - 2831146..2832117 (+) 972 WP_327243097.1 FAD-dependent oxidoreductase -
  OG395_RS13265 (OG395_13215) - 2832287..2833576 (-) 1290 WP_327243098.1 M14 family metallocarboxypeptidase -
  OG395_RS13270 (OG395_13220) - 2833573..2835552 (-) 1980 WP_327243099.1 Xaa-Pro dipeptidyl-peptidase -
  OG395_RS13275 (OG395_13225) - 2835637..2835905 (+) 269 Protein_2650 M1 family peptidase -
  OG395_RS13280 (OG395_13230) cytR 2836034..2837077 (+) 1044 WP_327243100.1 LacI family DNA-binding transcriptional regulator Regulator
  OG395_RS13285 (OG395_13235) - 2837107..2837913 (+) 807 WP_327243101.1 SAM-dependent methyltransferase -
  OG395_RS13290 (OG395_13240) - 2837982..2838875 (-) 894 WP_327243102.1 oxygenase MpaB family protein -
  OG395_RS13295 (OG395_13245) - 2839478..2839674 (-) 197 Protein_2654 long-chain fatty acid--CoA ligase -
  OG395_RS13300 (OG395_13250) - 2839876..2840607 (+) 732 WP_327243103.1 MerR family transcriptional regulator -
  OG395_RS13305 (OG395_13255) thrS 2840649..2841974 (-) 1326 WP_327243104.1 threonine--tRNA ligase -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 37306.06 Da        Isoelectric Point: 4.8670

>NTDB_id=659878 OG395_RS13280 WP_327243100.1 2836034..2837077(+) (cytR) [Streptomyces sp. NBC_01320]
MPGPSPDSARDVRPTLEAVAALAGVSRATASRVVNGGAGVRQPLVDQVRKAVEELGYIPNHAARTLVTRRNGAVAVIIDE
PEFRIFSDPFFSRQIRGISRELNVFDAQLVLLLVEGSGDFDRVTRYLAGGHVDGVLAFSLHTDDELPAIIRRFRVPTVYG
GRPGTTGAASEHAVPYVDCDNRGGAIEAVRHLVSLGRQRIAHIAGPRDQTSALDRIDGYREVLPDADPSLVADGDFTTEG
GARAMAELLARHPDLDAVFASNDLMASGALRVLGEHGRRVPEDVALVGFDDMEQVAEATDPPLTTVRQDVEGMGRLMVRL
LMQRLDGEGEEPDSVITPTELVKRASA

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=659878 OG395_RS13280 WP_327243100.1 2836034..2837077(+) (cytR) [Streptomyces sp. NBC_01320]
TTGCCCGGTCCGAGCCCCGATTCCGCTCGCGATGTCCGTCCCACGCTGGAGGCCGTGGCGGCTCTCGCCGGGGTCTCCAG
GGCGACGGCCTCCCGGGTCGTGAACGGCGGGGCGGGGGTGCGCCAGCCGCTGGTGGACCAGGTCCGCAAGGCGGTCGAGG
AGCTCGGCTACATACCGAACCATGCGGCACGAACCCTGGTCACGCGGCGCAACGGCGCGGTCGCCGTGATCATCGACGAG
CCGGAGTTCCGGATCTTCTCCGACCCGTTCTTCTCCCGCCAGATCCGCGGAATCAGCCGTGAACTCAACGTGTTCGACGC
CCAGTTGGTTCTGCTCCTGGTGGAGGGCAGCGGCGACTTCGACCGGGTCACCCGCTATCTGGCCGGGGGCCATGTGGACG
GTGTGCTGGCATTCTCGCTGCACACCGACGACGAACTTCCCGCGATCATCCGCCGGTTCCGGGTCCCCACGGTCTACGGC
GGCCGCCCCGGCACGACGGGCGCCGCGTCGGAACACGCCGTCCCCTACGTCGACTGCGACAACCGTGGGGGTGCCATCGA
GGCCGTACGCCATCTGGTCTCCCTCGGCCGGCAGCGGATCGCGCACATTGCGGGTCCCCGCGACCAGACGTCGGCGCTCG
ACCGGATCGACGGCTACCGCGAGGTACTGCCGGACGCCGATCCGTCCCTGGTCGCGGACGGTGACTTCACCACCGAGGGC
GGCGCCCGCGCGATGGCCGAGCTGCTGGCGCGCCACCCCGACCTCGACGCAGTGTTCGCGTCCAACGACCTGATGGCGTC
CGGCGCCCTGCGGGTGCTGGGCGAGCACGGCCGACGGGTGCCGGAGGATGTGGCGCTGGTGGGCTTCGACGACATGGAGC
AGGTCGCCGAGGCAACCGATCCGCCGTTGACGACGGTCCGTCAGGACGTCGAAGGAATGGGGCGGTTGATGGTTCGTCTG
TTGATGCAGCGGCTGGACGGCGAGGGAGAGGAGCCCGATTCGGTGATCACGCCGACCGAACTCGTCAAGCGGGCATCCGC
CTGA

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(189-346)

Bacterial regulatory proteins, lacI family (LacI)

(15-60)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

36.705

99.712

0.366