Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG384_RS29495 Genome accession   NZ_CP108385
Coordinates   6493426..6494400 (+) Length   324 a.a.
NCBI ID   WP_327339440.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01324     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6488426..6499400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG384_RS29480 (OG384_29485) - 6488679..6489668 (-) 990 WP_327339437.1 sugar ABC transporter permease -
  OG384_RS29485 (OG384_29490) - 6489668..6490966 (-) 1299 WP_327339438.1 sugar ABC transporter substrate-binding protein -
  OG384_RS29490 (OG384_29495) - 6491745..6492713 (-) 969 WP_327339439.1 glycoside hydrolase family 6 protein -
  OG384_RS29495 (OG384_29500) cytR 6493426..6494400 (+) 975 WP_327339440.1 LacI family DNA-binding transcriptional regulator Regulator
  OG384_RS29500 (OG384_29505) - 6494807..6495181 (+) 375 Protein_5812 integrase core domain-containing protein -
  OG384_RS29505 (OG384_29510) rhaI 6495801..6496955 (+) 1155 WP_327340752.1 L-rhamnose isomerase -
  OG384_RS29510 (OG384_29515) - 6497184..6499229 (+) 2046 WP_327339441.1 bifunctional aldolase/short-chain dehydrogenase -

Sequence

Protein


Download         Length: 324 a.a.        Molecular weight: 34189.12 Da        Isoelectric Point: 10.0546

>NTDB_id=659783 OG384_RS29495 WP_327339440.1 6493426..6494400(+) (cytR) [Streptomyces sp. NBC_01324]
MAARAGVSRAVASRAINNVPHVSRAKREAVERAVRELGYVPNSTARALASSKVGAVVLAASSDETGLFADPFFAEIIVGV
SAALEETDLQLVLVLANTQRGRGRLQQMVRSRRADGIMLMALRGDDPLGRLAEDAGMPVVFGGLPLSGEPRWYVDADNRG
GARLAADHFVRAGRTRPVMITGQVDSRVSVAREQGFAEGLALAGVPLLGVSSGAFQVEGGAEAMEQLLDAKPQLDAVFAA
SDGMAIGALQALRRRGRRVPEDVSVIGYDDLAGARHANPPLTTVRQPVRALGHEMARMLVSAINGQDPSPLILPTRLTVR
ESAP

Nucleotide


Download         Length: 975 bp        

>NTDB_id=659783 OG384_RS29495 WP_327339440.1 6493426..6494400(+) (cytR) [Streptomyces sp. NBC_01324]
GTGGCCGCACGAGCCGGTGTGTCGCGCGCAGTGGCTTCCCGGGCGATCAACAACGTCCCGCATGTGAGCCGGGCCAAGCG
GGAGGCCGTCGAACGGGCCGTCCGCGAGCTGGGGTACGTGCCGAACTCGACCGCGCGGGCGCTGGCCAGCAGCAAGGTCG
GCGCGGTGGTGCTGGCCGCTTCCAGTGACGAGACCGGCCTGTTCGCGGATCCGTTCTTCGCCGAGATCATCGTCGGGGTG
AGCGCGGCTCTGGAGGAGACCGACCTGCAGCTGGTCCTGGTGCTCGCCAATACGCAGCGCGGTCGCGGCCGCCTGCAGCA
GATGGTCCGCTCGCGCCGTGCCGACGGCATCATGCTGATGGCGCTACGTGGCGACGACCCGCTGGGACGGCTTGCCGAGG
ATGCCGGGATGCCGGTTGTCTTCGGCGGCCTGCCCCTGTCCGGGGAGCCCCGCTGGTACGTGGATGCCGACAACAGGGGC
GGGGCCAGGCTGGCCGCCGATCACTTCGTGCGCGCAGGGCGGACCAGGCCCGTCATGATCACAGGGCAGGTGGACAGCCG
GGTTTCGGTGGCCCGCGAGCAGGGTTTCGCCGAAGGATTGGCGCTGGCCGGCGTTCCGCTGCTGGGGGTTTCCTCCGGTG
CGTTCCAGGTGGAGGGCGGCGCAGAGGCGATGGAGCAATTGCTGGATGCCAAACCGCAGTTGGACGCGGTTTTCGCGGCA
TCGGACGGGATGGCGATCGGCGCGCTCCAGGCGCTCCGTCGCCGGGGGCGGCGGGTTCCCGAGGACGTCTCGGTGATCGG
CTACGACGACCTGGCCGGGGCTCGGCACGCCAACCCGCCACTGACCACCGTGCGTCAGCCGGTCAGGGCGCTGGGGCACG
AGATGGCGCGGATGCTGGTCAGCGCGATCAACGGGCAGGACCCGAGCCCGCTGATCCTGCCGACCCGGCTGACCGTGCGG
GAGTCCGCGCCGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(2-42)

Periplasmic binding protein-like domain (Peripla_BP_3)

(166-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.455

100

0.361