Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG384_RS27945 Genome accession   NZ_CP108385
Coordinates   6104278..6105474 (+) Length   398 a.a.
NCBI ID   WP_073739087.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01324     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6099278..6110474
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG384_RS27935 (OG384_27940) - 6101626..6103044 (+) 1419 WP_327339244.1 sugar porter family MFS transporter -
  OG384_RS27940 (OG384_27945) - 6103098..6104063 (-) 966 WP_327339245.1 LLM class flavin-dependent oxidoreductase -
  OG384_RS27945 (OG384_27950) pilA 6104278..6105474 (+) 1197 WP_073739087.1 signal recognition particle-docking protein FtsY Machinery gene
  OG384_RS27950 (OG384_27955) - 6105551..6106210 (-) 660 WP_327339246.1 bifunctional DNA primase/polymerase -
  OG384_RS27955 (OG384_27960) - 6106649..6108124 (+) 1476 WP_073739089.1 hypothetical protein -
  OG384_RS27960 (OG384_27965) - 6108490..6109842 (+) 1353 WP_327339247.1 ammonium transporter -
  OG384_RS27965 (OG384_27970) - 6109839..6110177 (+) 339 WP_003965965.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 41983.90 Da        Isoelectric Point: 4.4551

>NTDB_id=659774 OG384_RS27945 WP_073739087.1 6104278..6105474(+) (pilA) [Streptomyces sp. NBC_01324]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPAEPHVGEEAETPRDESRRTIEEVGLPPTEAEEEQAP
EAVAPPALDVPEPTAGRLVRLRTRLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRERVRV
LGTRTPEGLRSLLREELLTLLGTDFDRAVKTESGVDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAA
AADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLDEILL
VLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPFDPEAFVDALIGD

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=659774 OG384_RS27945 WP_073739087.1 6104278..6105474(+) (pilA) [Streptomyces sp. NBC_01324]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAGCCCCATGTCGGCGAGGAGGCCG
AAACGCCGCGCGACGAATCGCGCCGCACCATCGAGGAGGTCGGGCTCCCGCCCACAGAGGCCGAGGAGGAGCAGGCCCCG
GAGGCCGTCGCGCCTCCCGCGCTCGACGTCCCCGAGCCCACCGCCGGCCGTCTGGTCCGACTGCGGACCCGGCTCGCCCG
CTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGGGACAACCTCGACGAGGACACCTGGGAGGAGATCG
AGGACACCCTCCTCACCGCCGACGTCGGCGTCGCCCCCACCCAGGAGCTGGTGGAACGGCTCCGCGAGCGCGTCCGGGTC
CTCGGCACCCGTACCCCGGAGGGCCTGCGCTCGCTGCTGCGCGAGGAACTCCTCACCCTGCTCGGCACCGACTTCGACCG
TGCGGTCAAGACGGAGAGCGGCGTCGACACCCCCGGCGTCGTTATGGTCGTCGGTGTCAACGGCACCGGGAAGACCACCA
CCACCGGAAAGCTCGCCCGGGTGCTCGTGGCGGACGGCCGCAGCGTCGTACTCGGCGCGGCCGACACCTTCCGGGCCGCC
GCCGCCGATCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACCGTGCGCGGACCCGAGGGCGGTGACCCGGCCTC
GATCGCCTTCGACGCGGTGAAGGAGGGCATCGCGGAGGGCGCCGACGTCGTACTGATCGACACGGCGGGCCGGCTGCACA
CCAAGACCGGTCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTGGTCGAGAAGCACGGACCGCTCGACGAGATCCTGCTC
GTCCTGGACGCCACCACCGGGCAGAACGGCCTGGTGCAGGCCCGGGTCTTCGCGGAGGTCGTCGACATCACCGGCATCGT
CCTCACCAAGCTGGACGGCACCGCCAAGGGTGGCATCGTCATCGCCGTCCAGCGCGAGCTGGGCGTACCGGTGAAGCTGA
TCGGGCTCGGCGAGGGGCCGGACGACCTGGCCCCCTTCGACCCGGAGGCGTTCGTGGACGCCCTGATCGGGGACTAG

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(112-177)

SRP54-type protein, GTPase domain (SRP54)

(199-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

45.483

80.653

0.367