Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   MKS83_RS10120 Genome accession   NZ_CP092711
Coordinates   2292632..2293984 (+) Length   450 a.a.
NCBI ID   WP_240583064.1    Uniprot ID   A0A5N7U8B2
Organism   Chryseobacterium sp. Y16C     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2287632..2298984
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS83_RS10100 (MKS83_10100) yidC 2287809..2289605 (-) 1797 WP_240583061.1 membrane protein insertase YidC -
  MKS83_RS10105 (MKS83_10105) - 2289787..2291394 (-) 1608 WP_100376713.1 CTP synthase -
  MKS83_RS10110 (MKS83_10110) - 2291543..2292112 (-) 570 WP_240583062.1 YceI family protein -
  MKS83_RS10115 (MKS83_10115) - 2292174..2292572 (-) 399 WP_240583063.1 hypothetical protein -
  MKS83_RS10120 (MKS83_10120) radA 2292632..2293984 (+) 1353 WP_240583064.1 DNA repair protein RadA Machinery gene
  MKS83_RS10125 (MKS83_10125) - 2294142..2295698 (+) 1557 WP_240583065.1 zinc-dependent metalloprotease -
  MKS83_RS10130 (MKS83_10130) - 2295809..2296477 (+) 669 WP_240583066.1 class I SAM-dependent methyltransferase -
  MKS83_RS10135 (MKS83_10135) - 2296474..2297181 (+) 708 WP_240583067.1 VanW family protein -
  MKS83_RS10140 (MKS83_10140) - 2297178..2297771 (+) 594 WP_240583068.1 ACP phosphodiesterase -
  MKS83_RS10145 (MKS83_10145) - 2297778..2298278 (-) 501 WP_240583069.1 DUF6702 family protein -
  MKS83_RS10150 (MKS83_10150) - 2298352..2298930 (+) 579 WP_100376722.1 HupE/UreJ family protein -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49820.37 Da        Isoelectric Point: 6.6948

>NTDB_id=659756 MKS83_RS10120 WP_240583064.1 2292632..2293984(+) (radA) [Chryseobacterium sp. Y16C]
MAKLKTAYFCQNCGSQYPQWTGQCKNCGEWNTLVEEVVEKTASHKTPPFSKTKQHVINIIEVEAIEEPRIKTPSDELNRV
LGGGIVLGSVTLIGGEPGIGKSTLLLQLALKMKKKIFYVSGEESASQIKMRADRLADVKNPNCFLYTETSLEKILHEAKK
LEPDFVIIDSIQTLQSQLIESSPGTVSQIRECSNEIIKYAKENNVPVFLVGHITKDGQIAGPKVLEHMVDVVLNFDGDRN
HLFRLLRANKNRFGSTAEIGIYEMISQGLKEIKNPSEILITKKSEELSGNSVAVTIEGNRPMLLEIQALVSSAVYGTPQR
SSTGFDSKRLNMLLAVLEKRAGFQLGAKDVFLNITGGIKTDDPALDLAVVASILSSNEDIPISEHYCFAGEIGLSGEIRP
IAQAEQRISEAEKLGYEKIFVSNLNKIPKKKFGIKIEEVSKIEDFHERLF

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=659756 MKS83_RS10120 WP_240583064.1 2292632..2293984(+) (radA) [Chryseobacterium sp. Y16C]
ATGGCAAAATTAAAAACAGCATATTTCTGTCAAAACTGCGGTTCACAGTATCCTCAATGGACCGGACAGTGTAAAAATTG
CGGTGAATGGAACACTTTGGTGGAAGAAGTGGTAGAAAAAACGGCTTCACACAAAACTCCGCCTTTTTCAAAGACAAAAC
AACATGTTATCAACATCATTGAAGTTGAAGCCATCGAAGAACCGAGAATAAAAACACCATCCGATGAGCTCAACAGAGTA
TTGGGAGGAGGCATTGTATTAGGTTCTGTCACTTTAATTGGTGGAGAACCGGGAATCGGGAAATCTACCCTGCTTCTTCA
ACTTGCCCTGAAAATGAAGAAAAAGATCTTTTATGTTTCAGGAGAAGAAAGTGCTTCCCAGATCAAAATGAGAGCTGACC
GTTTAGCTGATGTAAAAAACCCGAACTGTTTTCTTTACACTGAAACTTCTCTGGAAAAAATACTTCATGAAGCCAAGAAA
CTGGAGCCTGATTTTGTCATCATCGATTCTATACAGACCTTACAGTCTCAACTGATTGAAAGTTCTCCGGGAACCGTTTC
CCAAATCAGAGAATGTTCCAATGAAATCATTAAATACGCCAAGGAAAATAATGTTCCTGTATTTTTAGTCGGACACATCA
CCAAAGACGGACAAATCGCAGGTCCAAAAGTTCTGGAGCACATGGTAGATGTAGTGTTAAATTTTGATGGAGACAGAAAC
CACCTTTTCAGATTGTTAAGAGCCAATAAAAACCGCTTCGGATCAACTGCTGAAATCGGAATTTATGAAATGATCTCGCA
AGGATTAAAAGAAATCAAGAACCCCTCAGAAATATTAATCACAAAAAAATCTGAGGAGCTTTCCGGAAATTCCGTTGCTG
TAACCATTGAGGGAAACAGACCAATGCTATTAGAAATTCAGGCGTTAGTAAGTTCTGCAGTCTACGGAACTCCACAAAGA
AGCTCTACCGGATTTGATTCTAAAAGATTAAATATGCTGCTCGCTGTACTGGAAAAAAGAGCAGGTTTCCAATTGGGAGC
CAAAGACGTTTTCCTGAATATCACAGGAGGAATAAAAACAGATGATCCCGCTTTAGACTTGGCAGTGGTAGCTTCTATTC
TTTCTTCCAATGAGGATATTCCGATTTCTGAACATTATTGCTTTGCAGGTGAGATTGGATTAAGTGGCGAAATCCGTCCG
ATTGCACAGGCCGAACAGAGAATTTCTGAAGCCGAAAAACTGGGTTATGAAAAGATTTTTGTTTCTAACCTCAATAAAAT
TCCAAAGAAAAAATTTGGGATTAAAATCGAAGAAGTAAGTAAAATTGAAGATTTCCACGAGCGTCTTTTTTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-218)

Subunit ChlI of Mg-chelatase (ChlI)

(339-424)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5N7U8B2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.894

100

0.491
  radA Streptococcus pneumoniae Rx1

48.246

100

0.489
  radA Streptococcus pneumoniae D39

48.246

100

0.489
  radA Streptococcus pneumoniae R6

48.246

100

0.489
  radA Streptococcus pneumoniae TIGR4

48.246

100

0.489
  radA Streptococcus mitis NCTC 12261

48.352

100

0.489
  radA Streptococcus mitis SK321

50.118

94

0.471