Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG599_RS26340 Genome accession   NZ_CP108370
Coordinates   6123586..6124578 (-) Length   330 a.a.
NCBI ID   WP_327178433.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01335     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6118586..6129578
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG599_RS26330 (OG599_26350) - 6122756..6123271 (-) 516 Protein_5170 MFS transporter -
  OG599_RS26335 (OG599_26355) - 6123289..6123543 (+) 255 WP_327180297.1 hypothetical protein -
  OG599_RS26340 (OG599_26360) cytR 6123586..6124578 (-) 993 WP_327178433.1 LacI family DNA-binding transcriptional regulator Regulator
  OG599_RS26345 (OG599_26365) - 6124941..6126665 (+) 1725 WP_327178434.1 discoidin domain-containing protein -
  OG599_RS26350 (OG599_26370) - 6126828..6128201 (+) 1374 WP_327178435.1 DUF1996 domain-containing protein -
  OG599_RS26355 (OG599_26375) - 6128177..6128746 (+) 570 WP_327178436.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35078.12 Da        Isoelectric Point: 7.5229

>NTDB_id=659714 OG599_RS26340 WP_327178433.1 6123586..6124578(-) (cytR) [Streptomyces sp. NBC_01335]
MRRPTLEVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVHELGYVPNGAARNLVTRRTDTVAVVVSDPPQGVVSDDP
LFSAVVRAVSRELEKAGKRLVLMLAESDPSRTRVVQYIAGGHVDGVLLVALHGTDPLPAALARQGLPVVSFNRTSAQDVP
YVALDNAGGAALAVRHLLEGGRRRIATITGPLELYEARERLDGYRRTLRDTGRRSIVALGDFTRTSGAEAMRQLLEDDPG
LDAVFAANDLMAIGALRTLHRAGRRVPDDVAVIGFDDIEAAAYTSPALTSVRSPMADQATAAVHLLLGLIDGGPATPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=659714 OG599_RS26340 WP_327178433.1 6123586..6124578(-) (cytR) [Streptomyces sp. NBC_01335]
ATGAGACGCCCCACTCTCGAAGTGGTCGCCGCCCGGGCGGGCGTCTCCAAGTCGAGCGTCTCCCGTGTCATCAACGGCGA
GACGACGGTGGCCCCGCAGATCCGGGACGTCGTCATGCGCGCCGTCCACGAACTGGGCTACGTGCCCAACGGGGCGGCAC
GCAACCTCGTCACCCGCCGCACGGACACCGTCGCCGTCGTGGTCTCCGACCCGCCTCAGGGAGTCGTCTCCGACGACCCC
CTCTTCTCCGCCGTGGTGCGGGCCGTCAGCAGGGAGCTGGAGAAAGCGGGCAAACGGCTCGTGCTCATGCTCGCGGAATC
GGACCCGAGCCGGACCCGGGTGGTGCAGTACATCGCCGGCGGGCACGTGGACGGCGTACTCCTGGTCGCCCTGCACGGTA
CGGATCCGCTGCCGGCCGCACTGGCACGGCAGGGCCTGCCCGTCGTGTCCTTCAACCGCACCTCCGCCCAGGACGTTCCG
TACGTGGCGCTGGACAACGCCGGCGGAGCGGCACTGGCCGTGCGTCACCTCCTGGAGGGCGGGCGACGCCGGATCGCCAC
CATCACCGGGCCCCTCGAACTGTACGAAGCGCGCGAACGCCTCGACGGCTACCGTCGGACGCTGCGTGACACCGGCCGGC
GCTCCATCGTGGCACTGGGCGACTTCACCAGAACCTCAGGCGCCGAAGCCATGCGGCAGCTCCTGGAGGACGACCCCGGC
CTCGACGCGGTGTTCGCGGCCAACGACCTGATGGCGATCGGAGCCCTGCGCACCCTTCACCGGGCGGGCCGGCGTGTCCC
CGACGACGTGGCGGTCATCGGCTTCGACGACATAGAAGCCGCGGCCTACACCAGCCCCGCCCTGACCTCGGTACGCAGCC
CGATGGCCGACCAGGCGACCGCCGCCGTCCACCTGCTCCTCGGCCTGATCGACGGCGGCCCCGCGACGCCGGTGATCATG
CCGAACGAACTCGTGGTGCGTGAATCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.207

100

0.361