Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG599_RS25910 Genome accession   NZ_CP108370
Coordinates   6003721..6004518 (-) Length   265 a.a.
NCBI ID   WP_327178356.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01335     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5998721..6009518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG599_RS25895 (OG599_25915) - 5998739..5999464 (+) 726 WP_327178353.1 GNAT family N-acetyltransferase -
  OG599_RS25900 (OG599_25920) - 5999540..6001432 (+) 1893 WP_327178354.1 IucA/IucC family siderophore biosynthesis protein -
  OG599_RS25905 (OG599_25925) - 6001542..6003512 (+) 1971 WP_327178355.1 ATP-dependent DNA helicase -
  OG599_RS25910 (OG599_25930) dinR/lexA 6003721..6004518 (-) 798 WP_327178356.1 transcriptional repressor LexA Regulator
  OG599_RS25915 (OG599_25935) nrdR 6005080..6005586 (+) 507 WP_327178357.1 transcriptional regulator NrdR -
  OG599_RS25920 (OG599_25940) - 6005746..6008637 (+) 2892 WP_327178358.1 vitamin B12-dependent ribonucleotide reductase -
  OG599_RS25925 (OG599_25945) - 6008933..6009481 (-) 549 WP_327178359.1 TerD family protein -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 28753.48 Da        Isoelectric Point: 7.4761

>NTDB_id=659711 OG599_RS25910 WP_327178356.1 6003721..6004518(-) (dinR/lexA) [Streptomyces sp. NBC_01335]
MTTSADSATITARDHRSPSRPEPVHAMNDSVTNPDGPEPPRAARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGY
PPSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPTSQQTDTTGKPAASYVPLVGRIAAGGPILA
EESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLEGEATVKRFRREDGHVWLLPH
NAAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 798 bp        

>NTDB_id=659711 OG599_RS25910 WP_327178356.1 6003721..6004518(-) (dinR/lexA) [Streptomyces sp. NBC_01335]
GTGACCACCAGCGCCGACAGTGCCACGATCACTGCCCGGGACCACCGCTCTCCGAGCCGACCTGAGCCGGTGCATGCAAT
GAATGACTCTGTCACGAACCCGGACGGGCCGGAGCCCCCCAGGGCCGCACGCTCCTTGCCCGGGCGCCCCCCTGGCATCC
GGGCGGACAGCTCGGGCCTCACCGACCGGCAGCGGCGGGTCATCGAGGTCATCCGCGACTCGGTGCAGCGCCGGGGGTAC
CCACCGTCGATGCGGGAGATCGGGCAGGCCGTGGGCCTGTCCAGCACCTCGTCGGTGGCCCACCAGCTCATGGCCCTGGA
GCGCAAGGGTTTCCTGCGCAGAGACCCGCACCGCCCGCGGGCGTACGAAGTCCGGGGTTCGGACCAGCCCACCTCGCAGC
AGACGGACACGACCGGCAAGCCCGCCGCCTCGTACGTCCCTCTGGTCGGCCGGATCGCGGCCGGTGGTCCGATCCTCGCC
GAGGAGTCGGTGGAGGACGTCTTCCCGCTCCCGCGCCAACTGGTCGGTGACGGCGAGCTGTTCGTGCTGAAGGTCGTCGG
AGACTCCATGATCGAAGCCGCGATCTGCGACGGCGACTGGGTCACTGTACGCCGCCAGCCCGTCGCCGAGAACGGCGACA
TCGTCGCCGCCATGCTGGAGGGCGAGGCCACGGTCAAGCGGTTCCGCCGCGAGGACGGCCATGTGTGGCTGCTCCCGCAC
AACGCCGCGTACCAGCCGATCCCCGGTGACGAGGCGACCATTCTCGGCAAGGTCGTGGCGGTGCTGCGGCGCGTTTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(147-259)

LexA DNA binding domain (LexA_DNA_bind)

(58-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80

0.374