Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG599_RS25105 Genome accession   NZ_CP108370
Coordinates   5801310..5802512 (+) Length   400 a.a.
NCBI ID   WP_327178223.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01335     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5796310..5807512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG599_RS25100 (OG599_25120) - 5799643..5801061 (+) 1419 WP_327178222.1 sugar porter family MFS transporter -
  OG599_RS25105 (OG599_25125) pilA 5801310..5802512 (+) 1203 WP_327178223.1 signal recognition particle-docking protein FtsY Machinery gene
  OG599_RS25110 (OG599_25130) - 5802596..5803243 (-) 648 WP_327178224.1 bifunctional DNA primase/polymerase -
  OG599_RS25115 (OG599_25135) - 5803711..5805186 (+) 1476 WP_327178225.1 hypothetical protein -
  OG599_RS25120 (OG599_25140) - 5805540..5806889 (+) 1350 WP_327178226.1 ammonium transporter -
  OG599_RS25125 (OG599_25145) - 5806886..5807224 (+) 339 WP_299533529.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 42001.83 Da        Isoelectric Point: 4.4094

>NTDB_id=659707 OG599_RS25105 WP_327178223.1 5801310..5802512(+) (pilA) [Streptomyces sp. NBC_01335]
MEIVILAVVIALVAVGLISGLVVSSRKKKQLPPSAPSSTPTITPSAEPRVGEESEAPRDEARRTIEEAGTPDTEAPAEEA
PSAAEETPALDVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVVPTQELVDRLRERV
RVLGTRTPEELRALLREELIALLGPDFDREVKTEGGAETPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFR
AAAADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLDEI
LLVLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLIGLGEGPDDLAPFEPGAFVDALIGD

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=659707 OG599_RS25105 WP_327178223.1 5801310..5802512(+) (pilA) [Streptomyces sp. NBC_01335]
ATGGAAATCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCTGTCGGCCTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGTCGAGCACGCCGACCATCACTCCTTCCGCCGAACCCCGTGTCGGTGAGGAGT
CCGAGGCGCCGCGCGACGAAGCGCGGCGCACCATCGAGGAGGCCGGAACCCCGGACACCGAGGCCCCCGCCGAGGAGGCT
CCGTCCGCCGCCGAGGAGACCCCCGCCCTCGACGTCCCCGAGCCCACCGCGGGCCGTCTCGTACGGCTCCGGGCCCGGCT
CGCCCGCTCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGGGACAACCTCGACGAGGACACCTGGGAGG
AGATCGAGGACACCCTCCTCACCGCCGACGTCGGCGTCGTTCCCACCCAGGAGCTCGTCGACCGGCTGCGCGAACGCGTC
CGGGTGCTCGGCACCCGTACCCCCGAGGAGCTCCGCGCGCTGCTGCGCGAAGAGCTGATCGCCCTGCTGGGCCCCGACTT
CGACCGCGAGGTCAAGACCGAGGGCGGGGCCGAGACCCCGGGCGTCGTCATGGTCGTCGGCGTCAACGGCACCGGCAAGA
CCACCACCACCGGCAAGCTGGCCCGCGTGCTCGTGGCGGACGGCCGCAGCGTGGTCCTCGGCGCGGCCGACACCTTCCGC
GCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGAGCGCGTACGGTACGCGGCCCCGAGGGCGGCGACCC
CGCGTCGATCGCCTTCGACGCCGTGAAGGAGGGCATCGCCGAGGGCGCGGACGTCGTGCTCATCGACACGGCCGGCCGGC
TGCACACCAAGACCGGCCTGATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCACGGCCCGCTCGACGAGATC
CTGCTGGTGCTCGACGCCACCACCGGCCAGAACGGTCTGGTCCAGGCCCGGGTCTTCGCCGAGGTCGTGGACATCACCGG
CATCGTCCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAGCTGGGCGTCCCGGTGA
AGCTCATCGGGCTCGGCGAGGGTCCGGACGACCTGGCCCCGTTCGAGCCGGGCGCCTTCGTGGACGCGCTGATCGGCGAC
TGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(114-179)

SRP54-type protein, GTPase domain (SRP54)

(201-398)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

43.127

92.75

0.4