Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   MKR81_RS09340 Genome accession   NZ_CP092682
Coordinates   2000323..2001744 (+) Length   473 a.a.
NCBI ID   WP_005428021.1    Uniprot ID   A0AAQ2XXF0
Organism   Vibrio campbellii strain IFL1     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1995323..2006744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS09320 (MKR81_09320) - 1995714..1996325 (-) 612 WP_240304424.1 flavin reductase family protein -
  MKR81_RS09325 (MKR81_09325) - 1996991..1997686 (+) 696 WP_182053709.1 NAD(P)H-binding protein -
  MKR81_RS09330 (MKR81_09330) - 1997880..1999253 (+) 1374 WP_045378534.1 L-cystine transporter -
  MKR81_RS09335 (MKR81_09335) - 1999481..2000161 (+) 681 WP_240304425.1 DUF1826 domain-containing protein -
  MKR81_RS09340 (MKR81_09340) sbcB 2000323..2001744 (+) 1422 WP_005428021.1 exodeoxyribonuclease I Machinery gene
  MKR81_RS09345 (MKR81_09345) - 2001803..2002177 (+) 375 WP_012127845.1 CidA/LrgA family protein -
  MKR81_RS09350 (MKR81_09350) - 2002179..2002856 (+) 678 WP_240304426.1 LrgB family protein -
  MKR81_RS09355 (MKR81_09355) cdd 2003121..2004008 (+) 888 WP_050905666.1 cytidine deaminase -
  MKR81_RS09360 (MKR81_09360) - 2004072..2004323 (-) 252 WP_240304427.1 hypothetical protein -
  MKR81_RS09365 (MKR81_09365) - 2004301..2004582 (-) 282 WP_240304428.1 hypothetical protein -
  MKR81_RS09370 (MKR81_09370) - 2004561..2004767 (-) 207 WP_223975927.1 hypothetical protein -
  MKR81_RS09375 (MKR81_09375) purT 2004976..2006151 (+) 1176 WP_240304429.1 formate-dependent phosphoribosylglycinamide formyltransferase -

Sequence

Protein


Download         Length: 473 a.a.        Molecular weight: 54525.84 Da        Isoelectric Point: 4.9293

>NTDB_id=659672 MKR81_RS09340 WP_005428021.1 2000323..2001744(+) (sbcB) [Vibrio campbellii strain IFL1]
MHQDNQPTFFFFDYETWGTSPAKDRPSQFAGVRTDENFNIIGEPLVMYCRPPADYLPSPEAALITGITPQKAMQEGLPEP
EFIAKIHAELSKPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQNGNSRWDLLDVMRACHALRPEGVEWPENDEGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIEMAKKVKAAQPKLFDYFFSMRNKRKLNELVDIVNMTPLMHVSGMLGRECQY
TSWIVPVAWHPTNNNAVITIDLAKDPQPILELSAEELKERLYTKRDELGELLPVPVKLVHLNKCPILAPAKTLTAENAEV
IGIDRQKCLSNLALLRQHPEIREKLISLFSIEREFEKSDDVDTQLYDGFFSPADRAAMDIIRETDPNNLAALDIEFDDKR
IKPLLFRYRARHYAGTLDEQEQRRWAQHCREVFESQIEEYMLNLENLVHEHESDEKKIAILKSVYRYVESLAS

Nucleotide


Download         Length: 1422 bp        

>NTDB_id=659672 MKR81_RS09340 WP_005428021.1 2000323..2001744(+) (sbcB) [Vibrio campbellii strain IFL1]
ATGCACCAAGATAATCAGCCCACTTTTTTCTTTTTTGATTACGAGACTTGGGGAACAAGTCCAGCCAAAGATCGCCCAAG
CCAATTCGCTGGCGTTCGCACTGATGAAAACTTCAATATCATTGGTGAACCTTTGGTCATGTACTGTCGTCCGCCCGCTG
ATTACCTTCCTTCACCAGAAGCCGCTTTAATCACTGGTATTACGCCACAAAAAGCGATGCAAGAAGGCCTACCTGAACCT
GAATTTATCGCTAAGATCCACGCAGAGCTTTCTAAGCCAAATACCACTAGTCTTGGCTACAACAGCATCCGCTTCGATGA
TGAAGTCACACGTTACACCTGTTACCGCAACTTTATCGATCCTTATGCGTGGAGCTGGCAAAACGGTAACTCACGCTGGG
ATTTACTCGATGTAATGCGTGCGTGTCATGCTCTTCGCCCAGAAGGCGTAGAATGGCCAGAAAATGATGAAGGCTTTACA
AGCTTCAAACTTGAACATTTATCCGTAGCAAATGGTATTGAACACAGCAATGCCCACGATGCGATGGCAGACGTGATTGC
AACGATTGAGATGGCGAAGAAAGTCAAAGCCGCTCAACCAAAGCTGTTTGATTACTTTTTCTCGATGCGTAACAAACGCA
AACTGAACGAGTTAGTCGATATTGTTAACATGACGCCATTGATGCACGTGTCGGGCATGTTGGGACGCGAATGCCAATAC
ACCAGTTGGATTGTGCCTGTGGCTTGGCACCCAACCAACAATAACGCTGTTATTACGATTGACTTGGCGAAGGATCCTCA
GCCGATCTTAGAACTTTCAGCAGAAGAGTTGAAAGAACGTTTGTACACCAAGCGTGACGAATTGGGCGAGCTGCTGCCTG
TACCCGTTAAGCTCGTGCACCTGAACAAGTGCCCTATCCTTGCGCCTGCTAAGACTCTAACTGCGGAAAATGCGGAAGTT
ATTGGTATCGATCGTCAGAAATGTTTAAGCAATTTAGCCTTGTTACGCCAACACCCAGAAATCCGCGAAAAGCTGATTAG
TCTATTCTCTATTGAACGTGAATTCGAAAAGAGCGACGACGTGGATACACAGCTTTATGACGGCTTCTTCTCTCCTGCAG
ACCGCGCGGCGATGGACATCATTCGTGAAACGGATCCGAATAATCTGGCTGCGTTAGATATTGAGTTTGATGACAAACGT
ATCAAGCCGTTGTTATTCCGTTACCGTGCTCGTCACTATGCTGGCACCCTGGATGAACAAGAACAAAGACGCTGGGCACA
ACATTGTCGCGAAGTGTTCGAAAGCCAGATTGAAGAGTACATGCTGAATTTAGAAAACTTAGTTCACGAACATGAAAGTG
ACGAAAAGAAGATAGCAATACTAAAATCTGTCTATCGTTATGTAGAGAGCTTAGCCTCCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-190)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

79.281

100

0.793