Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   MKR81_RS08740 Genome accession   NZ_CP092682
Coordinates   1857350..1858891 (+) Length   513 a.a.
NCBI ID   WP_005427698.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1852350..1863891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS08715 (MKR81_08715) - 1852755..1853075 (+) 321 WP_005427675.1 STAS domain-containing protein -
  MKR81_RS08720 (MKR81_08720) - 1853101..1853955 (+) 855 WP_240304351.1 OmpA family protein -
  MKR81_RS08725 (MKR81_08725) - 1853952..1856054 (+) 2103 WP_240304352.1 SLBB domain-containing protein -
  MKR81_RS08730 (MKR81_08730) - 1856054..1856743 (+) 690 WP_077261479.1 AAA family ATPase -
  MKR81_RS08735 (MKR81_08735) - 1856756..1857139 (+) 384 WP_240304353.1 Hpt domain-containing protein -
  MKR81_RS08740 (MKR81_08740) luxO 1857350..1858891 (+) 1542 WP_005427698.1 sigma-54 dependent transcriptional regulator Regulator
  MKR81_RS08745 (MKR81_08745) - 1858866..1859942 (+) 1077 WP_240304354.1 glycosyltransferase -
  MKR81_RS08750 (MKR81_08750) - 1860095..1861279 (+) 1185 WP_240304355.1 glycosyltransferase -
  MKR81_RS08755 (MKR81_08755) - 1861290..1862462 (+) 1173 WP_212581467.1 glycosyltransferase family 4 protein -
  MKR81_RS08760 (MKR81_08760) - 1862455..1863876 (+) 1422 WP_240304356.1 lipopolysaccharide biosynthesis protein -

Sequence

Protein


Download         Length: 513 a.a.        Molecular weight: 57485.42 Da        Isoelectric Point: 6.0424

>NTDB_id=659671 MKR81_RS08740 WP_005427698.1 1857350..1858891(+) (luxO) [Vibrio campbellii strain IFL1]
MRPRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGREAIQFIEHNKPQLIILDLKLPDMSGEDVLDWINENEIPTSVIIA
TAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKRAKLENLVENIQSTFDRHNYHGFIGSSLPMQAVYKTIDAVA
PTSASVFIVGESGTGKEVCAEAVHRQSDRRDKPFIAINCGAIPRDLMESEIFGHVKGAFTGATTDRKGAATLAHGGTLFL
DELCEMELEMQKKLLRFLQTGTYTPLGGTKEMKVDVRIICATNRDPLKEVEEGRFREDLYYRVHVVPIDMPPLRERGSDI
VTLAKHFLLTYAKQDKKKFKHIGNDVQHVIKNYDWPGNVRQLQNIIRNIVVLNDEDKVTLPHLPVQLTRKPEKTPSVSPA
NAVSVKETSFITEQTDSVQNEAFPTSEPASATYSFSDPENQPTISGAQRASVYFNSDGTIRPMWKVEREAIQNAIAYCDG
NVLNAAVMLELSPSTVYRKKQAWEADEANLKQS

Nucleotide


Download         Length: 1542 bp        

>NTDB_id=659671 MKR81_RS08740 WP_005427698.1 1857350..1858891(+) (luxO) [Vibrio campbellii strain IFL1]
ATGAGACCAAGGGTGTTACTGGTAGAGGACTCTACTTCACTAGCCATACTTTATAAGCAGTACGTCAAGGATGAACCTTA
CGACATCTTCCACGTTGAAACTGGACGTGAGGCGATTCAATTCATTGAGCACAACAAACCACAACTTATTATTCTCGACC
TAAAACTTCCAGACATGTCCGGAGAAGACGTTCTTGATTGGATTAATGAGAATGAGATTCCAACCTCTGTCATCATAGCA
ACGGCGCATGGTAGCGTTGATCTAGCCGTCAACCTGATCCAGAAAGGCGCAGAAGATTTCCTAGAAAAACCCATCAATGC
CGATCGTTTGAAAACCTCCGTTGCCTTGCATTTAAAACGCGCCAAACTAGAAAATCTCGTCGAGAACATTCAATCGACTT
TCGATCGTCACAACTATCACGGATTTATTGGCTCTAGCCTTCCAATGCAGGCGGTTTACAAAACCATTGATGCAGTTGCC
CCGACCTCAGCTAGCGTGTTTATCGTTGGTGAAAGTGGAACGGGTAAAGAAGTGTGTGCCGAAGCGGTTCACCGACAAAG
TGATCGCAGAGACAAGCCATTCATTGCAATTAACTGCGGCGCTATCCCTCGTGATTTGATGGAAAGCGAAATATTTGGCC
ATGTAAAGGGGGCTTTCACTGGCGCTACCACCGATCGTAAAGGTGCAGCGACCCTTGCTCATGGCGGCACACTATTCTTG
GACGAACTGTGTGAAATGGAGCTAGAGATGCAGAAAAAGTTATTACGCTTTCTGCAAACGGGAACCTACACACCTCTCGG
GGGCACTAAAGAGATGAAGGTCGATGTTCGTATTATCTGTGCAACCAACCGAGACCCTCTGAAAGAGGTAGAAGAAGGTC
GTTTCCGTGAAGACTTGTATTATCGCGTTCATGTCGTTCCCATCGACATGCCGCCGCTAAGAGAAAGAGGCAGTGACATT
GTCACGCTAGCGAAGCACTTTTTGCTCACTTATGCCAAACAAGATAAGAAAAAGTTCAAACACATCGGTAACGACGTTCA
GCATGTCATTAAAAACTACGACTGGCCAGGGAATGTTCGCCAGCTACAAAACATCATTCGTAACATTGTTGTATTAAATG
ATGAAGATAAGGTCACGCTACCGCACTTGCCTGTTCAACTGACTCGTAAGCCGGAAAAGACGCCTTCTGTATCGCCTGCG
AATGCTGTGAGCGTAAAAGAAACGAGCTTCATTACCGAACAAACCGACTCCGTGCAGAATGAAGCCTTCCCAACCTCGGA
GCCAGCAAGCGCCACCTATTCTTTCTCTGATCCTGAAAACCAACCAACTATCTCTGGAGCACAAAGGGCTTCAGTCTATT
TTAATTCAGACGGCACCATTCGTCCGATGTGGAAAGTCGAGCGAGAGGCGATTCAAAACGCAATTGCTTACTGTGATGGT
AACGTACTTAACGCTGCGGTGATGTTGGAACTCAGCCCTTCAACGGTCTACCGCAAAAAACAAGCGTGGGAAGCAGATGA
AGCTAATCTCAAACAATCTTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(463-499)

Sigma-54 interaction domain (Sigma54_activat)

(143-308)

Response regulator receiver domain (Response_reg)

(5-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

49.598

97.076

0.481