Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   MKR81_RS05360 Genome accession   NZ_CP092682
Coordinates   1133639..1135042 (+) Length   467 a.a.
NCBI ID   WP_038889850.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1128639..1140042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS05340 (MKR81_05340) - 1128663..1129994 (+) 1332 WP_240305187.1 excinuclease ABC subunit B -
  MKR81_RS05345 (MKR81_05345) - 1130014..1130454 (+) 441 WP_038889848.1 hypothetical protein -
  MKR81_RS05355 (MKR81_05355) uvrB 1131266..1133296 (+) 2031 WP_005531398.1 excinuclease ABC subunit UvrB -
  MKR81_RS05360 (MKR81_05360) luxO 1133639..1135042 (+) 1404 WP_038889850.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  MKR81_RS05365 (MKR81_05365) luxU 1135039..1135383 (+) 345 WP_047481078.1 quorum-sensing phosphorelay protein LuxU -
  MKR81_RS05370 (MKR81_05370) - 1135501..1136394 (-) 894 WP_005531401.1 YvcK family protein -
  MKR81_RS05375 (MKR81_05375) moaA 1136692..1137681 (+) 990 WP_050909394.1 GTP 3',8-cyclase MoaA -
  MKR81_RS05380 (MKR81_05380) moaB 1137782..1138294 (+) 513 WP_005433210.1 molybdenum cofactor biosynthesis protein B -
  MKR81_RS05385 (MKR81_05385) moaC 1138321..1138797 (+) 477 WP_005433216.1 cyclic pyranopterin monophosphate synthase MoaC -
  MKR81_RS05390 (MKR81_05390) moaD 1138797..1139054 (+) 258 WP_005433220.1 molybdopterin synthase sulfur carrier subunit -
  MKR81_RS05395 (MKR81_05395) moaE 1139056..1139511 (+) 456 WP_005433207.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 467 a.a.        Molecular weight: 52154.68 Da        Isoelectric Point: 5.8849

>NTDB_id=659669 MKR81_RS05360 WP_038889850.1 1133639..1135042(+) (luxO) [Vibrio campbellii strain IFL1]
MQQMTEGQKSRYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLHAVKKSH
PDVPIIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNEADNPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAANDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSHEEGKSFVRFAQDVIERFNSYEWPGNVRQLQNVLRNIVVLNNGKEITLDMLPPPLNQPVVRQS
VAKFIEPDIMTVSDIMPLWMTEKMAIEQAIQACEGNIPRAAGYLDVSPSTIYRKLQAWNSKDEKQNV

Nucleotide


Download         Length: 1404 bp        

>NTDB_id=659669 MKR81_RS05360 WP_038889850.1 1133639..1135042(+) (luxO) [Vibrio campbellii strain IFL1]
ATGCAACAAATGACAGAAGGTCAAAAGTCTCGTTATCTACTTATGGTAGAAGACACCGCATCCGTTGCGGCACTTTACCG
TTCTTACCTCACGCCACTTGGCATCGATATCAATATTGTTGGAACAGGCAGAGACGCCATTGAAAGCCTGAACCATCGCA
TTCCTGATCTTATCCTGCTCGATCTTCGTCTACCTGATATGACGGGGATGGACGTATTGCACGCGGTGAAGAAAAGCCAT
CCAGACGTGCCAATCATCTTCATGACTGCCCATGGCTCTATCGATACTGCGGTAGAGGCGATGCGCCACGGTTCTCAAGA
CTTCCTAATCAAACCATGTGAGGCAGACCGTTTACGTGTCACGGTGAACAATGCGATCCGCAAAGCAACCAAATTAAAGA
ATGAAGCTGACAACCCTGGTAACCAAAATTACCAAGGCTTCATCGGCAGTAGCCAAACGATGCAGCAGGTTTATCGCACC
ATTGACTCTGCTGCGAGCAGTAAGGCGAGTATTTTCATTACTGGTGAAAGTGGCACGGGTAAAGAAGTGTGTGCGGAGGC
GATTCACGCAGCAAGTAAGCGTGGAGATAAGCCGTTTATCGCCATCAACTGTGCAGCAATTCCGAAAGACCTTATTGAAA
GTGAACTGTTTGGTCACGTAAAAGGTGCTTTCACCGGTGCGGCTAATGATCGACAAGGTGCGGCAGAGCTTGCTGATGGC
GGCACGTTGTTCCTTGATGAACTCTGTGAAATGGACTTGGATCTTCAAACTAAGCTATTGCGCTTTATCCAAACGGGTAC
ATTCCAAAAAGTCGGTTCTTCTAAAATGAAGAGCGTGGATGTGCGCTTTGTGTGTGCAACTAACCGAGACCCTTGGAAAG
AAGTGCAAGAAGGCCGTTTCCGTGAAGACTTGTATTACCGTTTGTACGTGATTCCTTTGCACCTTCCGCCGCTGCGTGAG
CGTGGTGAAGACGTTATTGAAATTGCATACTCGTTGCTTGGTTATATGTCTCATGAGGAAGGCAAGAGTTTCGTCCGTTT
CGCACAAGACGTGATTGAAAGATTCAACAGCTACGAATGGCCAGGTAACGTTCGCCAGTTGCAAAACGTATTACGTAATA
TCGTGGTACTGAACAATGGCAAAGAGATCACGCTGGATATGTTACCGCCACCACTGAATCAGCCTGTTGTGCGCCAATCG
GTAGCAAAATTTATTGAACCTGACATCATGACGGTGTCAGATATTATGCCGCTTTGGATGACAGAGAAAATGGCCATCGA
GCAGGCAATTCAAGCGTGTGAAGGCAACATTCCACGCGCTGCTGGCTATTTGGATGTCAGCCCATCAACGATTTATCGCA
AGTTGCAAGCTTGGAATAGCAAGGACGAAAAACAAAACGTATGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(418-458)

Response regulator receiver domain (Response_reg)

(14-122)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

95.931

0.829