Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MKR81_RS02785 Genome accession   NZ_CP092682
Coordinates   569399..569917 (+) Length   172 a.a.
NCBI ID   WP_005426655.1    Uniprot ID   -
Organism   Vibrio campbellii strain IFL1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 564399..574917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKR81_RS02775 (MKR81_02775) gshA 567116..568684 (+) 1569 WP_240305018.1 glutamate--cysteine ligase -
  MKR81_RS02780 (MKR81_02780) - 568746..569309 (+) 564 WP_012128887.1 hypothetical protein -
  MKR81_RS02785 (MKR81_02785) luxS 569399..569917 (+) 519 WP_005426655.1 S-ribosylhomocysteine lyase Regulator
  MKR81_RS02790 (MKR81_02790) - 570006..571280 (-) 1275 WP_005534059.1 CNNM domain-containing protein -
  MKR81_RS02795 (MKR81_02795) - 571436..572230 (-) 795 WP_005426660.1 inner membrane protein YpjD -
  MKR81_RS02800 (MKR81_02800) ffh 572444..573826 (+) 1383 WP_005462555.1 signal recognition particle protein -
  MKR81_RS02805 (MKR81_02805) rpsP 574037..574285 (+) 249 WP_005438039.1 30S ribosomal protein S16 -
  MKR81_RS02810 (MKR81_02810) rimM 574313..574861 (+) 549 WP_005534055.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19059.82 Da        Isoelectric Point: 4.7297

>NTDB_id=659662 MKR81_RS02785 WP_005426655.1 569399..569917(+) (luxS) [Vibrio campbellii strain IFL1]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTAPNKDILSEKGIHTLEHLYAGFMRNHLNGDSVEIIDISP
MGCRTGFYMSLIGTPSEQQVADAWIAAMEDVLKVESQNKIPELNEYQCGTAAMHSLDEAKQIAKNILEAGVAVNKNDELA
LPESMLKELRID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=659662 MKR81_RS02785 WP_005426655.1 569399..569917(+) (luxS) [Vibrio campbellii strain IFL1]
ATGCCTTTATTAGACAGCTTTACCGTTGACCACACGCGCATGAATGCACCAGCGGTTCGTGTGGCTAAAACGATGCAAAC
TCCAAAAGGAGACACCATCACGGTATTCGACCTACGTTTCACTGCTCCAAACAAAGACATCCTTTCTGAGAAAGGAATTC
ATACATTAGAGCACTTGTACGCAGGCTTTATGCGTAATCACCTAAATGGTGACAGCGTTGAGATCATTGATATCTCACCA
ATGGGTTGCCGTACTGGTTTCTACATGAGCTTGATTGGTACGCCTTCAGAGCAGCAAGTGGCTGACGCTTGGATTGCAGC
GATGGAAGATGTGCTAAAAGTAGAAAGCCAAAACAAGATCCCTGAGCTGAACGAATACCAATGTGGTACAGCAGCGATGC
ACTCTCTGGATGAAGCGAAGCAAATTGCGAAGAACATTCTAGAAGCGGGGGTGGCGGTGAATAAGAATGATGAATTGGCA
CTGCCAGAGTCAATGCTGAAAGAGCTACGTATCGACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

87.135

99.419

0.866