Detailed information NTG0659659

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MKR81_RS02655
• Genome accession: NZ_CP092682
• Coordinates: 546648..547634 (+)
• Length: 328 a.a.
• NCBI ID: WP_005425361.1
• Uniprot ID: A7MTT4
• Organism: Vibrio campbellii strain IFL1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 541648..552634

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MKR81_RS02620 (MKR81_02620)	ftsB	541654..541935 (+)	282	WP_005452106.1	cell division protein FtsB	-
MKR81_RS02625 (MKR81_02625)	ispD	541937..542647 (+)	711	WP_050914399.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
MKR81_RS02630 (MKR81_02630)	ispF	542662..543138 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MKR81_RS02635 (MKR81_02635)	truD	543184..544227 (+)	1044	WP_240305011.1	tRNA pseudouridine(13) synthase TruD	-
MKR81_RS02640 (MKR81_02640)	surE	544227..545003 (+)	777	WP_005531673.1	5'/3'-nucleotidase SurE	-
MKR81_RS02645 (MKR81_02645)	-	545003..545629 (+)	627	WP_012128909.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
MKR81_RS02650 (MKR81_02650)	-	545644..546567 (+)	924	WP_038891105.1	peptidoglycan DD-metalloendopeptidase family protein	-
MKR81_RS02655 (MKR81_02655)	rpoS	546648..547634 (+)	987	WP_005425361.1	RNA polymerase sigma factor RpoS	Regulator
MKR81_RS02660 (MKR81_02660)	mutS	547724..550285 (-)	2562	WP_162093527.1	DNA mismatch repair protein MutS	-
MKR81_RS02665 (MKR81_02665)	pncC	550371..550853 (+)	483	WP_103412692.1	nicotinamide-nucleotide amidase	-
MKR81_RS02670 (MKR81_02670)	recA	551054..552097 (+)	1044	WP_005425359.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37482.36 Da
• Isoelectric Point: 4.7331

>NTDB_id=659659 MKR81_RS02655 WP_005425361.1 546648..547634(+) (rpoS) [Vibrio campbellii strain IFL1]
MSISNTVTKVEEFEYDNASTEGIANNELEKTSNRTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=659659 MKR81_RS02655 WP_005425361.1 546648..547634(+) (rpoS) [Vibrio campbellii strain IFL1]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGACAATGCATCAACGGAAGGCATTGCTAACAACGA
GCTTGAAAAAACATCCAACCGAACCAAAACAGCAGCACGCGAAGAATTCGACGCGAGCAGTAAGAGCCTAGATGCTACTC
AGCTTTACTTAGGCGAAATTGGTTTTTCACCTCTACTCACGGCAGAAGAAGAAGTACTTTATGCTCGACGTGCGCTGCGT
GGCGATGAAGCTGCTCGCAAACGTATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGTCGATACAGCAATCG
TGGTCTAGCACTTCTTGATCTCATTGAAGAAGGTAATTTAGGTCTGATTCGTGCGGTAGAGAAGTTTGATCCAGAAAGAG
GCTTCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAATCAAACTCGTACAATC
CGTCTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGACCATGA
ACCAACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGCAAAATGCTTCGCCTTAATGAGCGCA
TTAGCTCTGTCGATACACCGATTGGTGGTGACGGCGAGAAAGCGCTACTGGATATTATTCCTGATGCCAACAACTCGGAT
CCTGAAGTTTCCACTCAGGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGA
AGTGCTAGCGCGTCGTTTTGGTCTGCTTGGCTATGAGCCATCAACACTTGAAGAAGTGGGACGTGAGATTGGTCTAACAC
GCGAACGTGTTCGTCAGATCCAGGTGGAAGGTTTACGTCGACTACGCGAGATCTTGATCAAACAAGGTCTGAATATGGAA
AACTTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

3D structure

• AlphaFold DB: A7MTT4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.881	100	0.857