Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG471_RS30385 Genome accession   NZ_CP108369
Coordinates   6958557..6959753 (+) Length   398 a.a.
NCBI ID   WP_327172551.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01336     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6953557..6964753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG471_RS30370 (OG471_30400) - 6954446..6955864 (+) 1419 WP_219569182.1 sugar porter family MFS transporter -
  OG471_RS30375 (OG471_30405) - 6955938..6956903 (-) 966 WP_219569184.1 LLM class flavin-dependent oxidoreductase -
  OG471_RS30380 (OG471_30410) - 6956967..6958361 (-) 1395 Protein_5988 cytosine permease -
  OG471_RS30385 (OG471_30415) pilA 6958557..6959753 (+) 1197 WP_327172551.1 signal recognition particle-docking protein FtsY Machinery gene
  OG471_RS30390 (OG471_30420) - 6959850..6960509 (-) 660 WP_306071814.1 bifunctional DNA primase/polymerase -
  OG471_RS30395 (OG471_30425) - 6960933..6962408 (+) 1476 WP_219569190.1 hypothetical protein -
  OG471_RS30400 (OG471_30430) - 6962779..6964131 (+) 1353 WP_219569192.1 ammonium transporter -
  OG471_RS30405 (OG471_30435) - 6964128..6964466 (+) 339 WP_136330688.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 398 a.a.        Molecular weight: 42048.08 Da        Isoelectric Point: 4.5630

>NTDB_id=659642 OG471_RS30385 WP_327172551.1 6958557..6959753(+) (pilA) [Streptomyces sp. NBC_01336]
MEFVILAVVIALVAVGVISGLVVSSRKKKQLPPAPSSTPTITPPAEPHVGEEAETPRDTSRRTIEEVGLPPEEAPETAEP
QKPAAPALDVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSRDNLDEDTWEEIEDTLLTADVGVAPTQELVERLRERVRV
LGTRTPEELRKLLREELLTLLGTDFDRVVRTEGGAETPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLGAADTFRAA
AADQLQTWGERVGARTVRGPEGGDPASIAFDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKHGPLDEILL
VLDATTGQNGLVQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGPDDLAPFEPEAFVDALIGD

Nucleotide


Download         Length: 1197 bp        

>NTDB_id=659642 OG471_RS30385 WP_327172551.1 6958557..6959753(+) (pilA) [Streptomyces sp. NBC_01336]
ATGGAATTCGTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGTGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCCCCGGCACCGTCGAGCACGCCGACCATCACTCCTCCCGCCGAGCCCCATGTCGGCGAGGAGGCCG
AGACGCCGCGCGACACCTCGCGCCGCACCATCGAGGAGGTCGGCCTTCCGCCCGAGGAGGCCCCGGAAACCGCAGAACCA
CAGAAGCCCGCCGCCCCCGCGCTGGACGTCCCCGAGCCCACCGCCGGCCGTCTCGTACGGCTGCGGGCCAGGCTCGCCCG
ATCGCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTCCTGTCCCGGGACAACCTCGACGAGGACACCTGGGAGGAGATCG
AGGACACCCTCCTCACCGCCGACGTCGGCGTCGCTCCCACCCAGGAACTGGTCGAACGGCTCCGCGAGCGCGTCCGCGTG
CTCGGCACCCGTACCCCCGAGGAACTGCGCAAGCTGCTGCGCGAGGAACTCCTCACCCTGCTCGGCACCGACTTCGACCG
CGTGGTCAGGACGGAGGGCGGGGCGGAGACCCCGGGCGTCGTCATGGTCGTCGGCGTCAACGGCACCGGCAAGACCACCA
CCACCGGCAAGCTGGCCCGGGTGCTCGTGGCCGACGGTCGCAGCGTCGTGCTCGGCGCGGCCGACACCTTCCGCGCCGCC
GCCGCCGACCAGCTCCAGACCTGGGGCGAGCGCGTCGGCGCCCGCACTGTGCGCGGACCCGAGGGCGGCGACCCGGCGTC
GATCGCCTTCGACGCCGTGAAGGAAGGCATCGCCGAGGGCGCCGACGTCGTGCTCATCGACACGGCGGGCCGGCTGCACA
CCAAGACCGGGCTGATGGACGAGCTCGGCAAGGTCAAGCGGGTCGTCGAGAAGCACGGACCGCTCGACGAGATCCTGCTC
GTCCTCGACGCGACCACCGGCCAGAACGGCCTGGTGCAGGCGCGGGTGTTCGCCGAGGTCGTCGACATCACCGGCATCGT
CCTCACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGCGCGAGCTGGGCGTACCGGTGAAGCTGG
TCGGGCTCGGCGAGGGGCCGGACGATCTGGCCCCGTTCGAGCCGGAGGCGTTCGTGGACGCCCTGATCGGGGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(199-396)

SRP54-type protein, helical bundle domain (SRP54_N)

(112-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

42.659

90.704

0.387