Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG471_RS13420 Genome accession   NZ_CP108369
Coordinates   3167279..3169210 (+) Length   643 a.a.
NCBI ID   WP_219572589.1    Uniprot ID   A0ABY9IUN3
Organism   Streptomyces sp. NBC_01336     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3162279..3174210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG471_RS13405 (OG471_13425) - 3163561..3163860 (+) 300 WP_219572595.1 YtxH domain-containing protein -
  OG471_RS13410 (OG471_13430) - 3163933..3165378 (+) 1446 WP_306070006.1 FGGY family carbohydrate kinase -
  OG471_RS13415 (OG471_13435) rcrP 3165546..3167279 (+) 1734 WP_219572591.1 ABC transporter ATP-binding protein Regulator
  OG471_RS13420 (OG471_13440) rcrQ 3167279..3169210 (+) 1932 WP_219572589.1 ABC transporter ATP-binding protein Regulator
  OG471_RS13425 (OG471_13445) - 3169301..3170425 (-) 1125 WP_306070007.1 RNA polymerase sigma factor -
  OG471_RS13430 (OG471_13450) dnaG 3170622..3172526 (-) 1905 WP_219575754.1 DNA primase -
  OG471_RS13435 (OG471_13455) - 3172653..3173912 (-) 1260 WP_306070008.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69129.47 Da        Isoelectric Point: 5.0427

>NTDB_id=659602 OG471_RS13420 WP_219572589.1 3167279..3169210(+) (rcrQ) [Streptomyces sp. NBC_01336]
MAGPGGRMMAGGAPTDRSMDFKGSSKRLLKRFAAEKATLYVMLVAVALSVALSVVGPKILGKATDLVFAGVVGRGMDAGT
TKEQAVEGLRKGNSGLADMLSKVDFTPGQGMDFDAIGRVLLVALAVYVGAGLLMLVSTRLSIRVINRVVFQLREDIQTKL
SRLPLSYFDRAKRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLVMMFWISPLLALVALVTVPLSVVVAAKVGKR
SQPQFVQQWKVTGKLNAHIEEMYTGHTLVKVFGRQDESARDFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLNYVLIAV
VGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERIFELLDAEEQDADPSKGEGEFPGELRGSVSL
ENVSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMSRDDLRSGIGMVLQD
TWLFGGTIAENIAYGASGDVTREQVEEAARAAHADRFIRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLD
EATSSVDTRTEVLIQKAMAGLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHDELLEAHGAYARLYAAQFAQAVA
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=659602 OG471_RS13420 WP_219572589.1 3167279..3169210(+) (rcrQ) [Streptomyces sp. NBC_01336]
ATGGCCGGGCCTGGCGGACGCATGATGGCGGGCGGCGCTCCGACCGACCGGTCCATGGACTTCAAGGGCTCGTCGAAGCG
GCTGCTGAAGCGCTTCGCGGCGGAGAAGGCCACCCTGTACGTGATGCTGGTGGCCGTCGCGCTGAGCGTGGCGCTGTCGG
TGGTCGGCCCGAAGATCCTCGGCAAGGCCACCGACCTGGTGTTCGCCGGAGTCGTCGGCCGGGGGATGGACGCGGGGACG
ACGAAGGAGCAGGCCGTCGAGGGCCTGCGCAAGGGCAACAGCGGTCTGGCCGACATGCTCTCCAAGGTGGACTTCACCCC
GGGGCAGGGCATGGACTTCGACGCGATCGGCCGGGTGCTGCTCGTGGCACTGGCCGTGTACGTCGGTGCGGGGCTGCTGA
TGCTGGTGTCGACGCGGCTGTCGATCCGGGTGATCAACCGGGTCGTGTTCCAGCTGCGTGAGGACATCCAGACGAAGCTG
TCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAACGCGGCGAGGTGCTGAGCCGGGCGACGAACGACATCGACAACAT
CTCCCAGACGATGCAGCAGACGATGGGGCAGCTGATCAACTCGCTGCTGACCATCGTCGGCGTGCTCGTGATGATGTTCT
GGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGCTGTCGGTAGTCGTGGCGGCGAAGGTCGGCAAGCGT
TCGCAGCCGCAGTTCGTCCAGCAGTGGAAGGTGACGGGCAAGCTCAACGCCCACATCGAGGAGATGTACACCGGGCACAC
CCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCGCGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCGGAT
TCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGATCGCCGTC
GTCGGCGGGCTGCGGGTCGCCTCGGGCGCGCTGTCGATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTC
CATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGGATCGCCTCGGCGGAACGGATCTTCGAGCTGC
TGGACGCCGAGGAGCAGGACGCCGACCCGTCGAAGGGCGAGGGCGAGTTCCCCGGGGAGCTGCGCGGCAGCGTGTCCCTG
GAGAACGTGTCGTTCCGCTACGACCCGGAGAAGCCGCTCATCGAGGACCTCTCGCTGAGCGTCGAGCCGGGCCACACGGT
CGCGATCGTCGGCCCGACCGGTGCCGGCAAGACGACGCTGGTCAACCTCCTGATGCGGTTCTACGAGGTGACCGGGGGCC
GGATCGCCCTCGACGGGGTCGACATCGCGAAGATGTCGCGCGACGACCTGCGCTCGGGCATCGGCATGGTCCTCCAGGAC
ACCTGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCCTACGGCGCGTCCGGCGACGTCACCCGGGAGCAGGTCGAGGA
GGCGGCGCGGGCGGCCCACGCCGACCGCTTCATCCGCACCCTGCCCGACGGTTACGACACGGTGATCGACGACGAGGGCT
CCGGTGTCAGCGCCGGCGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATACTGGTGCTCGAC
GAGGCGACCAGCTCCGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCCGGTCTCGCGCACGGCCGTACGAG
CTTCGTGATCGCGCACCGGCTCTCCACCATCCGGGACGCCGACGTCATCCTGGTGATGGAGAACGGGTCGATCGTCGAGC
AGGGCACGCACGACGAGCTGCTGGAGGCGCACGGCGCGTATGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGCC
GAGGTCGACTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(415-564)

ABC transporter transmembrane region (ABC_membrane)

(57-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.744

97.045

0.386