Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG471_RS13415 Genome accession   NZ_CP108369
Coordinates   3165546..3167279 (+) Length   577 a.a.
NCBI ID   WP_219572591.1    Uniprot ID   A0ABY9IWG5
Organism   Streptomyces sp. NBC_01336     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3160546..3172279
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG471_RS13385 (OG471_13405) - 3160977..3162467 (-) 1491 WP_327171230.1 MFS transporter -
  OG471_RS13405 (OG471_13425) - 3163561..3163860 (+) 300 WP_219572595.1 YtxH domain-containing protein -
  OG471_RS13410 (OG471_13430) - 3163933..3165378 (+) 1446 WP_306070006.1 FGGY family carbohydrate kinase -
  OG471_RS13415 (OG471_13435) rcrP 3165546..3167279 (+) 1734 WP_219572591.1 ABC transporter ATP-binding protein Regulator
  OG471_RS13420 (OG471_13440) rcrQ 3167279..3169210 (+) 1932 WP_219572589.1 ABC transporter ATP-binding protein Regulator
  OG471_RS13425 (OG471_13445) - 3169301..3170425 (-) 1125 WP_306070007.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62748.76 Da        Isoelectric Point: 5.2562

>NTDB_id=659601 OG471_RS13415 WP_219572591.1 3165546..3167279(+) (rcrP) [Streptomyces sp. NBC_01336]
MLIKLLRAYLRPYKKPIALLVVFQLLQTCATLYLPTLNADIIDNGVVQGDTGYIVQYGGVMIVVSIAQVVCNIGAVYIGA
RTASALGRDVRASVFDRVQSFSARELGRFGAPSLITRTTNDVQQVQMLALMTFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGVAVSLIVRKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDGYEEERFRGANTELTDVALSTGRLMAL
MFPTVMTVVNVSSIAVVWFGAHRIDSGGMEIGALTAFLSYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETESSVVP
PVNPVRELTVQGHLEVRGADFRYPGAEEPVLRSVDLVARAGETTAIIGSTGSGKSTLLGLVPRLFDVTDGQVLVDGTDVR
TLDPVLLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALETAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
SIARTLVQRPEIYLFDDSFSALDYATDAALRAALLRETRGATVVIVAQRVSTIRDADRILVLDEGRVVGSGSHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=659601 OG471_RS13415 WP_219572591.1 3165546..3167279(+) (rcrP) [Streptomyces sp. NBC_01336]
GTGCTCATAAAACTCCTGCGGGCCTATCTCCGCCCGTACAAGAAACCGATCGCGCTGCTGGTCGTCTTCCAGCTGCTGCA
GACCTGCGCCACTCTCTATCTGCCCACCCTCAACGCGGACATCATTGACAACGGTGTCGTGCAGGGGGACACGGGCTACA
TCGTCCAGTACGGCGGCGTCATGATCGTCGTCAGCATCGCCCAGGTGGTCTGCAACATCGGGGCCGTCTACATCGGAGCC
CGCACCGCGTCCGCGCTCGGGCGCGACGTACGGGCCTCGGTCTTCGACCGGGTGCAGTCGTTCTCCGCGCGCGAGCTCGG
CCGGTTCGGCGCTCCCTCGCTGATCACCCGTACGACCAACGACGTGCAGCAGGTCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGTGTCGGCGGCATCATCATGGCGCTCGGCCAGGACGTCCCGCTGTCCGCGGTG
CTGCTCGCGGTGGTGCCGGTCCTCGGCGTCGCGGTGAGCCTGATCGTGCGGAAGATGCGGCCGCTGTTCCGCACGATGCA
GGAGCGCCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGTGTCATCCGCGCGTTCGTACGGGACG
GCTACGAGGAGGAGCGCTTCCGGGGCGCCAACACCGAGCTGACGGACGTGGCGCTGTCCACGGGCCGGCTGATGGCACTG
ATGTTCCCGACCGTGATGACGGTCGTGAACGTGTCGTCGATCGCCGTCGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
CGGGATGGAGATCGGCGCGCTGACCGCGTTCCTCTCCTATCTGATGCAGATCGTCATGTCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCATCCAGGAGGTCCTGGAGACCGAGTCCTCCGTGGTGCCG
CCGGTGAACCCGGTGCGGGAGCTCACGGTCCAAGGGCATCTGGAGGTACGCGGTGCGGACTTCCGCTACCCCGGTGCCGA
GGAGCCGGTGCTGCGCTCCGTGGACCTGGTGGCGCGGGCCGGCGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGACTCGTACCGCGGCTGTTCGATGTGACGGACGGCCAGGTGCTGGTCGACGGGACGGACGTGCGG
ACGCTGGATCCGGTTCTGCTGGCGAAGACCGTGAGCCTGGTCCCGCAGAAGCCGTACCTGTTCTCCGGGACGGTCGCGAC
GAATCTGCGGTACGGGAACCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGACCGCGCAGGCCAAGGAGTTCG
TCGAGGCGCTGGAGCACGGGCTCGACGCACCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGGCAGCGGCAGCGGCTC
TCGATCGCCCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCGCTGGACTACGCCACGGA
CGCGGCGCTGCGTGCGGCGCTGCTGCGGGAGACGCGGGGGGCGACGGTGGTGATCGTCGCGCAGCGGGTGTCGACCATCC
GTGACGCCGACCGGATCCTGGTGCTGGACGAGGGCCGCGTCGTCGGTTCCGGCAGCCACCACGAACTGATGGACGGCAAT
GAGACATACCGGGAGATCGTTCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.7

94.107

0.383