Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   OG471_RS03540 Genome accession   NZ_CP108369
Coordinates   776363..777355 (-) Length   330 a.a.
NCBI ID   WP_327170435.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01336     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 771363..782355
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG471_RS03525 (OG471_03530) - 772714..773967 (+) 1254 WP_327170433.1 GAF domain-containing protein -
  OG471_RS03530 (OG471_03535) - 774130..775653 (+) 1524 WP_327170434.1 aldehyde dehydrogenase family protein -
  OG471_RS03535 (OG471_03540) - 775856..776233 (+) 378 WP_306068849.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  OG471_RS03540 (OG471_03545) cytR 776363..777355 (-) 993 WP_327170435.1 LacI family DNA-binding transcriptional regulator Regulator
  OG471_RS03545 (OG471_03550) - 777682..779397 (+) 1716 WP_327170436.1 discoidin domain-containing protein -
  OG471_RS03550 (OG471_03555) - 779573..780943 (+) 1371 WP_327170437.1 DUF1996 domain-containing protein -
  OG471_RS03555 (OG471_03560) - 780919..781659 (+) 741 WP_327170438.1 DUF305 domain-containing protein -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 35207.14 Da        Isoelectric Point: 6.0552

>NTDB_id=659585 OG471_RS03540 WP_327170435.1 776363..777355(-) (cytR) [Streptomyces sp. NBC_01336]
MKRPTLDVVAARAGVSKSSVSRVINGETTVAPQIRDVVMRAVNELGYVPNGAARNLVTRRTDTLAVVVSDPPQGVVSDDP
LFSAVVRAVSRELETAGKRLVLMLAESDRSRTRVVQYIAGGHVDGVLLVALHGTDPLPAALARQGLPVVSFNRTSAEDVP
YVALDNAGGAELAVRHLLERGRRRIATITGPLELYEARERLDGYRQTLRDTGRRSIVALGDFTRVSGAEAMRQLLEDDPD
LDAVFAANDLMAIGALRTLHQAGRRVPEDVAVIGFDDIEAASYTSPALTSVRSPMADQATAAVHLLLGLIDGGATGPVIM
PNELVVREST

Nucleotide


Download         Length: 993 bp        

>NTDB_id=659585 OG471_RS03540 WP_327170435.1 776363..777355(-) (cytR) [Streptomyces sp. NBC_01336]
ATGAAACGCCCCACTCTCGATGTGGTGGCCGCCCGGGCGGGCGTGTCCAAATCGAGCGTCTCCCGGGTGATCAACGGCGA
GACGACGGTCGCCCCGCAGATCCGAGACGTCGTCATGCGCGCCGTGAACGAACTGGGCTACGTGCCCAACGGCGCGGCAC
GCAATCTCGTCACCCGCCGCACGGACACCCTCGCCGTGGTGGTATCCGACCCGCCCCAAGGAGTCGTGTCCGACGACCCC
CTCTTCTCCGCCGTGGTCCGCGCCGTCAGCAGAGAGCTCGAGACGGCGGGCAAACGGCTCGTGCTCATGCTCGCGGAATC
GGACCGGAGCCGGACCAGAGTCGTGCAGTACATCGCCGGCGGGCATGTGGACGGCGTGCTCCTGGTCGCCTTGCACGGTA
CGGACCCGCTGCCCGCCGCACTGGCCCGGCAGGGCCTGCCTGTCGTGTCCTTCAACCGCACCTCCGCAGAGGACGTCCCG
TACGTCGCGCTGGACAACGCCGGCGGGGCGGAGCTGGCCGTGCGTCATCTCCTGGAGCGCGGCCGGCGCCGGATCGCCAC
CATCACCGGGCCGCTCGAACTGTACGAGGCGCGTGAGCGCCTCGATGGCTACCGTCAGACGCTGCGTGACACCGGCCGTC
GCTCCATCGTGGCTCTGGGCGACTTCACCAGAGTCTCCGGTGCCGAAGCCATGCGGCAGCTCCTGGAGGACGATCCCGAC
CTCGATGCGGTGTTCGCAGCCAACGACCTGATGGCGATCGGAGCCCTGCGCACCCTGCATCAAGCGGGCCGACGCGTCCC
CGAAGACGTGGCGGTCATCGGCTTCGACGACATAGAAGCCGCGTCCTACACCAGTCCCGCGCTCACCTCGGTGCGCAGCC
CGATGGCCGACCAGGCGACAGCCGCCGTCCACCTGCTCCTCGGCCTGATCGACGGTGGCGCCACAGGGCCGGTGATCATG
CCGAACGAGCTCGTCGTGCGCGAGTCGACCTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(5-50)

Periplasmic binding protein-like domain (Peripla_BP_3)

(174-330)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

35.207

100

0.361