Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG585_RS32735 Genome accession   NZ_CP108365
Coordinates   7252773..7253549 (-) Length   258 a.a.
NCBI ID   WP_266430282.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01340     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7247773..7258549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG585_RS32725 (OG585_32735) - 7248051..7250072 (+) 2022 WP_266629437.1 IucA/IucC family siderophore biosynthesis protein -
  OG585_RS32730 (OG585_32740) - 7250185..7252188 (+) 2004 WP_266629439.1 ATP-dependent DNA helicase -
  OG585_RS32735 (OG585_32745) dinR/lexA 7252773..7253549 (-) 777 WP_266430282.1 transcriptional repressor LexA Regulator
  OG585_RS32740 (OG585_32750) nrdR 7254067..7254651 (+) 585 WP_266430280.1 transcriptional regulator NrdR -
  OG585_RS32745 (OG585_32755) - 7254803..7257700 (+) 2898 WP_266629442.1 vitamin B12-dependent ribonucleotide reductase -
  OG585_RS32750 (OG585_32760) - 7257807..7258340 (-) 534 WP_266430275.1 TerD family protein -

Sequence

Protein


Download         Length: 258 a.a.        Molecular weight: 27911.64 Da        Isoelectric Point: 7.4237

>NTDB_id=659560 OG585_RS32735 WP_266430282.1 7252773..7253549(-) (dinR/lexA) [Streptomyces sp. NBC_01340]
MTTTADSATITAQDRSQGRLEPVHAMNEATNIEGPKRSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPPSMREI
GQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQSSAQPTDTAGKPAASYVPLVGRIAAGGPILAEESVEDV
FPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNAAYQPI
PGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 777 bp        

>NTDB_id=659560 OG585_RS32735 WP_266430282.1 7252773..7253549(-) (dinR/lexA) [Streptomyces sp. NBC_01340]
GTGACCACCACCGCAGACAGTGCCACCATCACTGCCCAGGACCGCTCCCAGGGCCGACTCGAGCCGGTGCATGCGATGAA
CGAAGCCACGAATATTGAGGGGCCCAAGCGCTCCCTGCCAGGGCGACCTCCAGGCATCCGCGCCGACAGCTCGGGACTCA
CCGACAGGCAACGCCGGGTGATCGAGGTCATCAGGGACTCCGTGCAGCGGCGCGGCTACCCGCCGTCGATGCGGGAGATC
GGACAGGCTGTCGGCCTTTCCAGCACCTCCTCTGTCGCCCATCAGCTGATGGCACTGGAGCGCAAGGGCTTCCTGCGCCG
CGACCCGCACCGACCGCGGGCGTACGAGGTTCGGGGCTCCGACCAGTCCTCGGCACAGCCCACGGACACGGCGGGCAAGC
CGGCCGCGTCGTACGTCCCGCTCGTCGGCCGTATCGCCGCCGGTGGCCCGATCCTGGCCGAGGAGTCGGTGGAGGACGTC
TTCCCCCTCCCCCGGCAGCTGGTCGGCGACGGCGAGCTGTTCGTCCTCAAGGTCGTCGGTGACTCGATGATCGAGGCCGC
CATCTGCGACGGGGACTGGGTGACGGTCCGCCGTCAGCCGGTCGCGGAGAACGGAGACATCGTGGCCGCCATGCTCGACG
GCGAGGCCACGGTGAAGCGGTTCAAGCGCGAGGACGGCCACGTATGGCTCCTCCCGCACAACGCCGCCTACCAGCCGATT
CCCGGCGACGAGGCGACCATCCTGGGCAAGGTGGTGGCGGTGCTGCGGCGCGTGTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(140-252)

LexA DNA binding domain (LexA_DNA_bind)

(51-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

45.714

81.395

0.372