Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SMUNUM_RS01655 Genome accession   NZ_AP014571
Coordinates   318768..320168 (+) Length   466 a.a.
NCBI ID   WP_002265009.1    Uniprot ID   A0AAX1K1T7
Organism   Streptococcus mutans LP13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 313768..325168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SMUNUM_RS01625 (SMNUM_0281) - 314406..314942 (+) 537 WP_019313066.1 5-formyltetrahydrofolate cyclo-ligase -
  SMUNUM_RS01630 (SMNUM_0282) - 314929..315600 (+) 672 WP_002265013.1 rhomboid family intramembrane serine protease -
  SMUNUM_RS01635 (SMNUM_0283) galU 315622..316542 (-) 921 WP_002262524.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  SMUNUM_RS01640 (SMNUM_0284) - 316544..317563 (-) 1020 WP_002262523.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  SMUNUM_RS01645 (SMNUM_0285) - 317887..318330 (+) 444 WP_019805325.1 dUTP diphosphatase -
  SMUNUM_RS01650 (SMNUM_0286) - 318340..318810 (+) 471 WP_019805326.1 isochorismatase family cysteine hydrolase -
  SMUNUM_RS01655 (SMNUM_0287) radA 318768..320168 (+) 1401 WP_002265009.1 DNA repair protein RadA Machinery gene
  SMUNUM_RS01660 (SMNUM_0288) - 320258..320752 (+) 495 WP_002262519.1 carbonic anhydrase -
  SMUNUM_RS01665 (SMNUM_0289) - 320941..321654 (+) 714 WP_002268867.1 TIGR00266 family protein -
  SMUNUM_RS01670 (SMNUM_0290) gltX 321940..323397 (+) 1458 WP_002265006.1 glutamate--tRNA ligase -
  SMUNUM_RS01675 (SMNUM_0291) - 323513..324037 (+) 525 WP_002268868.1 transcription repressor NadR -
  SMUNUM_RS01680 (SMNUM_0292) - 324104..324652 (+) 549 WP_019316731.1 hypothetical protein -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 51135.67 Da        Isoelectric Point: 7.1359

>NTDB_id=65956 SMUNUM_RS01655 WP_002265009.1 318768..320168(+) (radA) [Streptococcus mutans LP13]
MADCWNSNERRITIAKKKTTFVCQECGYNSPKYLGRCPNCSSWSSFVEEIEVAEVKNARVSLTGEKTRPVKLNQVTSSQA
TRVKTNMEEFNRVLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVFYVSGEESAEQIKLRSERLGDIDNEFYLY
AETNMQSIRAEIEKIQPDFLIIDSIQTVMSPEISSVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLE
HMVDTVLYFEGERQHTFRILRAVKNRFGSTNEIGIFEMRSGGLVEVLNPSQVFLEERLDGATGSAIVVTMEGTRPILAEV
QALVTPTVFGNAKRTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVRLDEPAIDLAVAVAIASSYKEKPTNPQE
CYIGEIGLTGEIRRVNRIEQRLNEASKLGFTKIFVPKNSLSGLTIPQGIQVIGVTTVSEVLKKVFN

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=65956 SMUNUM_RS01655 WP_002265009.1 318768..320168(+) (radA) [Streptococcus mutans LP13]
ATGGCAGATTGCTGGAATAGTAACGAAAGGAGAATTACCATAGCTAAGAAAAAAACAACTTTTGTCTGTCAAGAGTGCGG
CTATAATTCGCCCAAGTATCTGGGACGTTGTCCTAATTGCTCGTCTTGGTCTTCTTTTGTTGAAGAGATTGAAGTTGCTG
AGGTTAAAAATGCTCGCGTTTCACTGACAGGTGAGAAGACACGGCCAGTCAAGTTAAATCAGGTCACCTCCAGCCAAGCC
ACTAGAGTCAAGACCAATATGGAAGAATTCAACCGTGTTTTGGGTGGTGGTGTTGTACCAGGCAGTCTGGTTCTTATCGG
CGGCGATCCCGGCATCGGGAAATCGACCCTACTTTTGCAAGTTTCAACACAATTAGCCAATAAAGGAACTGTTTTTTATG
TTTCTGGTGAAGAATCAGCGGAGCAGATCAAGTTGCGTAGCGAGCGTCTCGGTGATATTGACAATGAGTTTTATCTCTAT
GCTGAAACTAATATGCAAAGTATTCGTGCTGAGATTGAAAAAATCCAGCCTGATTTTTTAATTATTGATTCTATTCAAAC
AGTGATGAGTCCTGAAATTTCCAGTGTTCAAGGTTCTGTTTCTCAGGTGCGTGAAGTGACAGCAGAATTAATGCAATTAG
CTAAAACCAATAACATTGCGACTTTTATTGTTGGACATGTGACTAAAGAAGGAACCTTAGCTGGACCGCGAATGTTAGAA
CACATGGTGGACACTGTGCTCTACTTTGAAGGCGAGCGGCAGCATACTTTTCGTATCTTACGAGCCGTTAAAAATCGCTT
TGGTTCTACTAATGAGATTGGTATTTTTGAAATGAGGTCGGGTGGTTTGGTTGAGGTTTTGAATCCCAGCCAAGTTTTTT
TAGAAGAGCGTCTAGATGGAGCAACAGGCTCAGCTATTGTTGTTACCATGGAAGGAACACGGCCTATTTTAGCGGAAGTA
CAAGCCCTAGTAACACCAACTGTTTTTGGTAATGCTAAACGGACAACAACAGGACTGGACTTTAATCGTGTTAGTTTGAT
TATGGCGGTTTTGGAGAAGCGCTGCGGACTTTTATTGCAAAATCAAGATGCCTATCTCAAATCAGCTGGTGGTGTGCGCT
TAGATGAGCCTGCTATTGATTTAGCGGTTGCGGTAGCCATTGCTTCCAGTTATAAGGAAAAGCCAACCAACCCTCAAGAA
TGTTATATTGGTGAAATTGGTTTGACAGGTGAAATTCGTCGTGTTAATCGTATCGAACAACGTCTCAATGAAGCTAGTAA
GCTTGGTTTTACCAAGATTTTTGTACCCAAAAATTCCCTGTCAGGTTTAACGATTCCACAAGGTATTCAGGTAATTGGTG
TGACAACTGTTAGTGAAGTCTTAAAAAAGGTATTTAATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(77-231)

Subunit ChlI of Mg-chelatase (ChlI)

(375-438)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(21-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

89.159

96.996

0.865
  radA Streptococcus pneumoniae D39

89.159

96.996

0.865
  radA Streptococcus pneumoniae R6

89.159

96.996

0.865
  radA Streptococcus pneumoniae TIGR4

89.159

96.996

0.865
  radA Streptococcus mitis SK321

89.159

96.996

0.865
  radA Streptococcus mitis NCTC 12261

88.938

96.996

0.863
  radA Bacillus subtilis subsp. subtilis str. 168

62.031

97.21

0.603

Multiple sequence alignment