Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MJ614_RS22780 Genome accession   NZ_CP092647
Coordinates   4303170..4303799 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain EC5502     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4298170..4308799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MJ614_RS22760 ycbZ 4298571..4300331 (-) 1761 WP_000156526.1 Lon protease family protein -
  MJ614_RS22765 matP 4300517..4300969 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  MJ614_RS22770 ompA 4301045..4302085 (-) 1041 WP_000750416.1 porin OmpA -
  MJ614_RS22775 sulA 4302442..4302951 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  MJ614_RS22780 sxy/tfoX 4303170..4303799 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  MJ614_RS22785 yccS 4303762..4305924 (-) 2163 WP_000875020.1 YccS family putative transporter -
  MJ614_RS22790 yccF 4305934..4306380 (-) 447 WP_001261235.1 YccF domain-containing protein -
  MJ614_RS22795 helD 4306503..4308557 (+) 2055 WP_000420536.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=659549 MJ614_RS22780 WP_000839153.1 4303170..4303799(+) (sxy/tfoX) [Escherichia coli strain EC5502]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=659549 MJ614_RS22780 WP_000839153.1 4303170..4303799(+) (sxy/tfoX) [Escherichia coli strain EC5502]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1