Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OG585_RS18905 Genome accession   NZ_CP108365
Coordinates   4206773..4207774 (-) Length   333 a.a.
NCBI ID   WP_075027220.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01340     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 4201773..4212774
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG585_RS18885 (OG585_18895) - 4202355..4202555 (-) 201 WP_266625379.1 hypothetical protein -
  OG585_RS18890 (OG585_18900) - 4202792..4204369 (-) 1578 WP_266625381.1 MFS transporter -
  OG585_RS18895 (OG585_18905) - 4204432..4205475 (+) 1044 WP_266625383.1 YafY family protein -
  OG585_RS18900 (OG585_18910) - 4205597..4206196 (-) 600 WP_266634409.1 TetR family transcriptional regulator -
  OG585_RS18905 (OG585_18915) rpoS 4206773..4207774 (-) 1002 WP_075027220.1 sigma-70 family RNA polymerase sigma factor Regulator
  OG585_RS18910 (OG585_18920) - 4207944..4208483 (+) 540 WP_266625385.1 GNAT family N-acetyltransferase -
  OG585_RS18915 (OG585_18925) - 4208525..4209286 (-) 762 WP_266634411.1 class III extradiol ring-cleavage dioxygenase -
  OG585_RS18920 (OG585_18930) - 4209465..4209974 (+) 510 WP_266625387.1 MarR family transcriptional regulator -
  OG585_RS18925 (OG585_18935) - 4210137..4211687 (-) 1551 WP_266625388.1 MFS transporter -
  OG585_RS18930 (OG585_18940) - 4211877..4212521 (-) 645 WP_266625389.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 37357.12 Da        Isoelectric Point: 4.9035

>NTDB_id=659525 OG585_RS18905 WP_075027220.1 4206773..4207774(-) (rpoS) [Streptomyces sp. NBC_01340]
MATRAVARRQSATGETADAARSVRAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVFARQILDDEVDAPKA
DATREELEALVAEGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYRKGFKFSTYATWWIRQA
ITRSIADQSRTIRLPVHLVEELGRIRRVQREFNRKNGREPEHAEIAAELDSTPERVTDVLDWARDPVSLNMSVDDDGDTQ
FGDLLEDTSAVSPEQSVLTLLRSEELDDLIGRLDQRTASIIKMRYGIDDGRERTLTEVGKEHGLTRERIRQIEKHALLEL
KKLARDTGFDAAA

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=659525 OG585_RS18905 WP_075027220.1 4206773..4207774(-) (rpoS) [Streptomyces sp. NBC_01340]
ATGGCAACCCGTGCCGTCGCCCGTCGTCAGTCCGCCACCGGCGAGACCGCCGACGCGGCACGCAGTGTTCGCGCCGTAGG
CGGCGAAATCGCCGACCGCGACCTGGTCGGCATGTACCTCGACGAGATCGCGCGTACGCCGCTGCTCGACGCCGCCAAGG
AAGTCGAGCTTTCCCAGATCATCGAGGCGGGTGTGTTCGCGCGGCAGATCCTCGACGACGAGGTGGATGCCCCCAAGGCG
GACGCGACCCGCGAGGAGCTCGAGGCGCTGGTCGCCGAGGGGGAGCGGGCCAAGGACGTCTTCATCCGCTCCAACCTGCG
GCTGGTCGTCGCCGTGGCCCGGCGATATCCCCGTAGCGGCCTTCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCC
TGGTGCGCGCCGTCGAGAAGTTCGACTACCGCAAGGGCTTCAAGTTCTCGACGTACGCCACGTGGTGGATCCGTCAGGCC
ATCACCCGCTCCATCGCCGACCAGTCGCGCACGATCCGCCTTCCCGTGCACCTGGTCGAGGAGCTGGGCCGCATCCGCCG
GGTGCAGCGCGAGTTCAACCGCAAGAACGGGCGGGAGCCCGAGCACGCGGAGATCGCCGCCGAGCTGGACTCGACCCCGG
AGCGTGTGACGGACGTCCTGGACTGGGCCCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGACGGTGACACCCAG
TTCGGTGACCTCCTCGAGGACACCTCCGCGGTCTCGCCCGAGCAGTCCGTCCTCACCCTGTTGCGCAGCGAGGAGCTCGA
CGACCTGATCGGCCGCCTCGACCAGCGCACGGCCTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGGGAGCGCA
CGCTCACGGAGGTCGGCAAGGAGCACGGGCTCACCCGTGAGCGCATCCGCCAGATCGAGAAGCACGCGCTGCTGGAGCTG
AAGAAGCTGGCCCGCGACACCGGTTTTGACGCGGCGGCTTAA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(101-170)

Sigma-70, region 4 (Sigma70_r4)

(270-322)

Sigma-70 region 3 (Sigma70_r3)

(180-256)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(34-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.333

90.09

0.363