Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG585_RS14525 Genome accession   NZ_CP108365
Coordinates   3182314..3184047 (+) Length   577 a.a.
NCBI ID   WP_266624591.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01340     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3177314..3189047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG585_RS14495 (OG585_14505) - 3178281..3179360 (+) 1080 WP_266624589.1 cellulase family glycosylhydrolase -
  OG585_RS14515 (OG585_14525) - 3180121..3180426 (+) 306 WP_054233549.1 hypothetical protein -
  OG585_RS14520 (OG585_14530) - 3180644..3182107 (+) 1464 WP_266624590.1 FGGY family carbohydrate kinase -
  OG585_RS14525 (OG585_14535) rcrP 3182314..3184047 (+) 1734 WP_266624591.1 ABC transporter ATP-binding protein Regulator
  OG585_RS14530 (OG585_14540) rcrQ 3184047..3185975 (+) 1929 WP_266650853.1 ABC transporter ATP-binding protein Regulator
  OG585_RS14535 (OG585_14545) - 3186244..3187554 (-) 1311 WP_266624593.1 RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62605.76 Da        Isoelectric Point: 6.5095

>NTDB_id=659513 OG585_RS14525 WP_266624591.1 3182314..3184047(+) (rcrP) [Streptomyces sp. NBC_01340]
MLIRLLRTYLSPYKKPIALLVLLQFLQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVFCNIGAVYYGA
RTASSVGRDIRAAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLALMTFTLLVSAPIMCVGGIVLALGLDVPLSAV
LVAVVPVLGIGVTLIVRRLRPLFRTMQVRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFESANSQLTEVSLGTGRMLAL
MFPMVMTVVNLSSIAVVWFGAHRIASGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLNTSSSVVP
PSSPVVELRRHGHLEIRGAGFRYPGAEEPVLKSIELVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TVEPKLLAKTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKGFVERLENGLDSPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSQETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHHELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=659513 OG585_RS14525 WP_266624591.1 3182314..3184047(+) (rcrP) [Streptomyces sp. NBC_01340]
GTGCTCATACGACTCCTTCGGACCTACCTCAGTCCGTACAAGAAACCCATCGCTCTCCTCGTTCTGCTGCAGTTCCTGCA
GACCTGCGCCACCCTGTACCTGCCGACTCTGAACGCGCACATCATCGACAACGGTGTCGTCAAGGGAGACACGGGCTACA
TCCTGTCCTTCGGCGCCCTGATGATCGGGATCTCGCTGGTCCAGGTCTTCTGCAACATCGGTGCCGTCTACTACGGCGCC
CGTACGGCGTCCTCCGTCGGCCGGGACATCCGGGCCGCCGTGTTCGACCGGGTGCAGTCCTTCTCCGCACGCGAAGTGGG
CCACTTCGGGGCGCCGTCCCTGATCACCCGCACCACCAATGACGTCCAGCAGGTGCAGATGCTCGCCCTGATGACGTTCA
CCCTGCTGGTGTCCGCGCCGATCATGTGTGTGGGCGGCATCGTACTGGCCCTCGGCCTGGACGTACCGCTCTCCGCGGTC
CTGGTCGCTGTGGTGCCGGTACTCGGCATCGGAGTGACCCTGATCGTGCGCCGGCTGCGCCCGCTGTTCAGGACCATGCA
GGTGCGTCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTCCGGGACG
ACTACGAGAAGGACCGCTTCGAGTCCGCCAACTCCCAGCTGACCGAGGTGTCCCTCGGTACCGGCCGGATGCTCGCCCTG
ATGTTCCCGATGGTCATGACCGTCGTGAACCTCTCGTCGATCGCCGTGGTCTGGTTCGGCGCCCACCGCATCGCCAGCGG
CGGCATGCAGATCGGCGACCTGACCGCCTTCCTCGCCTACCTCATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGGATCCAGGAGGTCCTGAACACCTCGTCCAGCGTCGTGCCG
CCGAGCTCGCCCGTCGTGGAACTGCGGCGCCACGGCCACCTGGAGATCCGCGGCGCCGGGTTCCGCTACCCGGGCGCCGA
GGAGCCCGTCCTGAAGTCCATCGAACTGGTGGCGCGGCCGGGTGAGACGACCGCCGTGATCGGGTCGACGGGCAGCGGCA
AGTCGACGCTGCTCGGGCTCGTGCCCCGGCTCTTCGACGCCACCGACGGAGAAGTCCTCGTCGACGGCGTGGACGTGGCG
ACCGTCGAGCCGAAGCTGCTCGCGAAGACGGTCGGGCTCGTCCCCCAGAAGCCGTACCTCTTCGCGGGGACGGTCGCCAC
CAACCTCCGCTACGGCAATCCGGACGCGACCGACGAGGAACTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGGCTTCG
TGGAGCGGCTGGAGAACGGCCTGGACTCGCCGATCGCACAGGGCGGCACCAATGTCTCCGGCGGTCAGCGCCAGCGCCTC
GCGATCGCCCGTACGCTCGTCCAGCGGCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCGCTGCGCGCGGCGCTCTCCCAGGAGACGGCCGAGGCGACCGTGGTGATCGTCGCCCAGCGGGTGTCGACCATTC
GGGACGCCGACCGGATCGTGGTCCTCGACGAGGGCCGGGTGGTGGGCACCGGGCGCCACCACGAGCTCATGGCCGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.995

100

0.414