Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG206_RS22560 Genome accession   NZ_CP108364
Coordinates   5139856..5141589 (-) Length   577 a.a.
NCBI ID   WP_327118910.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01341     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5134856..5146589
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG206_RS22550 (OG206_22575) - 5136824..5137900 (+) 1077 WP_327118906.1 RNA polymerase sigma factor -
  OG206_RS22555 (OG206_22580) rcrQ 5137931..5139856 (-) 1926 WP_327118908.1 ABC transporter ATP-binding protein Regulator
  OG206_RS22560 (OG206_22585) rcrP 5139856..5141589 (-) 1734 WP_327118910.1 ABC transporter ATP-binding protein Regulator
  OG206_RS22565 (OG206_22590) - 5141702..5143147 (-) 1446 WP_327118912.1 FGGY family carbohydrate kinase -
  OG206_RS22570 (OG206_22595) - 5143228..5143530 (-) 303 WP_327122363.1 YtxH domain-containing protein -
  OG206_RS22590 (OG206_22615) - 5144736..5145575 (+) 840 Protein_4446 FUSC family protein -
  OG206_RS22595 (OG206_22620) - 5145706..5146083 (+) 378 WP_327118914.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62528.56 Da        Isoelectric Point: 5.5607

>NTDB_id=659481 OG206_RS22560 WP_327118910.1 5139856..5141589(-) (rcrP) [Streptomyces sp. NBC_01341]
MLIKILRTYLGPYRQPILLLVLLQLLQTSASLYLPSLNADIIDNGVVRGDTDYILRYGAVMIAVSVLQVVCNVGAVYYGA
RTASALGREVRASVFGRVQSFSAREVGRFGAPSLITRTTNDVQQIQMLVLLAFTLMVSAPIMCVGGVILALGQDVPLSGV
LLAVLPVLGISVSLIVRRMRPLFRTMQVRLDTVNRVLREQITGNRVIRAFIRDDYEEGRFRGANTELTDVALSTGRLMAL
MFPTVMTVVNLSSIAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFIMVPRAEVCAERVQEVLDTESSVVP
PSAPVTKLLKHGHLEIRGAEFRYPGAEEPVLRAVDLVARPGETTAIIGSTGSGKSTLLGLVPRLFDATDGDVLVDGTDVR
TLDPALLAKTVSLVPQKPYLFSGTVATNLRYGNPDATDEELWHALEVAQAKGFVEELEHGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALSEETAAATVVIVAQRVSTIRDADRILVLDEGRLVGTGSHRELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=659481 OG206_RS22560 WP_327118910.1 5139856..5141589(-) (rcrP) [Streptomyces sp. NBC_01341]
GTGCTCATAAAAATCCTGCGGACCTACCTGGGTCCGTACAGACAGCCGATCCTGCTGCTGGTCCTGCTCCAGCTCCTGCA
GACCTCGGCAAGCCTCTACCTGCCCAGTCTCAACGCGGACATCATCGACAACGGTGTCGTGCGGGGGGACACGGACTACA
TCCTGCGCTACGGCGCGGTGATGATCGCCGTGAGTGTCCTCCAGGTCGTCTGCAACGTCGGGGCGGTCTACTACGGCGCC
AGGACGGCTTCCGCGCTCGGACGGGAGGTTCGGGCGTCGGTCTTCGGCCGGGTGCAGTCGTTCTCCGCGCGCGAGGTCGG
CAGGTTCGGTGCTCCTTCGCTGATCACGCGTACGACCAATGACGTGCAGCAGATCCAGATGCTCGTGCTGCTCGCCTTCA
CCCTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGGGTCATCCTGGCGCTCGGCCAGGACGTGCCGCTGTCGGGCGTC
CTGCTGGCCGTGCTGCCCGTCCTCGGCATCTCGGTGAGCCTGATCGTGAGGCGGATGCGTCCGCTGTTCCGCACGATGCA
GGTGCGGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTCATCCGCGCGTTCATACGGGACG
ACTACGAGGAGGGGCGCTTCCGGGGCGCGAACACCGAACTGACGGACGTGGCGCTGTCGACGGGCCGTCTGATGGCCCTC
ATGTTCCCGACCGTGATGACGGTGGTGAACCTGTCGTCGATCGCGGTCGTCTGGTTCGGTGCGCACCGGATCGACAGCGG
TGGGATGCAGATCGGGGCACTGACGGCCTTCCTGGCGTATCTGATGCAGATCGTCATGGCGGTGATGATGGCCACCTTCA
TGTTCATCATGGTGCCGCGCGCCGAGGTCTGCGCGGAGCGCGTCCAGGAGGTACTGGACACCGAGTCGAGCGTGGTACCG
CCGAGCGCCCCGGTCACGAAGCTGCTCAAGCACGGCCACCTCGAGATACGGGGTGCGGAGTTCCGCTACCCGGGTGCCGA
GGAGCCGGTGCTGCGGGCGGTCGATCTCGTGGCTCGGCCCGGGGAGACGACCGCGATCATCGGGTCGACGGGCAGCGGGA
AGTCGACGCTGCTCGGCCTCGTGCCGCGGCTGTTCGACGCGACGGACGGCGATGTGCTCGTCGACGGTACGGACGTGCGG
ACCCTGGATCCCGCCCTGCTGGCGAAGACGGTGAGCCTGGTCCCCCAGAAGCCGTACCTGTTCTCGGGGACGGTCGCGAC
GAACCTGCGGTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCCCTGGAGGTGGCGCAGGCGAAGGGCTTCG
TGGAGGAGCTCGAACACGGCCTGAACGCACCGATCGCGCAGGGCGGCACCAATGTGTCCGGCGGACAGCGCCAGCGCCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCGGCACTGGACTACGCGACGGA
CGCCGCCCTGCGGGCCGCGCTGTCCGAGGAGACGGCGGCGGCGACCGTGGTGATCGTCGCGCAGCGGGTGTCCACGATCC
GTGACGCCGACCGGATCCTGGTTCTGGACGAGGGCCGGCTCGTCGGGACCGGCAGTCATCGCGAGCTCATGGACGGAAAC
GAAACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.884

94.107

0.385