Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG206_RS22555 Genome accession   NZ_CP108364
Coordinates   5137931..5139856 (-) Length   641 a.a.
NCBI ID   WP_327118908.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01341     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5132931..5144856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG206_RS22540 (OG206_22565) - 5133379..5134638 (+) 1260 WP_327118902.1 FAD-dependent oxidoreductase -
  OG206_RS22545 (OG206_22570) dnaG 5134738..5136645 (+) 1908 WP_327118904.1 DNA primase -
  OG206_RS22550 (OG206_22575) - 5136824..5137900 (+) 1077 WP_327118906.1 RNA polymerase sigma factor -
  OG206_RS22555 (OG206_22580) rcrQ 5137931..5139856 (-) 1926 WP_327118908.1 ABC transporter ATP-binding protein Regulator
  OG206_RS22560 (OG206_22585) rcrP 5139856..5141589 (-) 1734 WP_327118910.1 ABC transporter ATP-binding protein Regulator
  OG206_RS22565 (OG206_22590) - 5141702..5143147 (-) 1446 WP_327118912.1 FGGY family carbohydrate kinase -
  OG206_RS22570 (OG206_22595) - 5143228..5143530 (-) 303 WP_327122363.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 641 a.a.        Molecular weight: 68948.07 Da        Isoelectric Point: 5.1183

>NTDB_id=659480 OG206_RS22555 WP_327118908.1 5137931..5139856(-) (rcrQ) [Streptomyces sp. NBC_01341]
MAGPGGRMMSMGPTERSMDFKGSGKRLLRRFSKEKSSLSLMLGAGTLSVALSVAGPKILGSATDLIFAGVVGRELPKGTT
KEQAVENLREKGSGGLADVLSGVDFTPGSGIDFGAVGNVLLVALAVYVAAGLLMLVSTRVSIRVINRVVFQLREDLQTKL
ARLPLSYFDRQQRGEVLSRATNDIDNISQTMQQTMGQLINSLLTIVGVLIMMFWISPLLALVALVTIPLSVVVATRIGKR
SQPHFVAQWKVTGALNAHIEEMYTGHTLVKTFGRQEESARDFAEQNDALYEAGFKAQFNSGIMQPLMMFVSNLNYVLVAV
VGGLRVASGSLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGIASAERVFGLLDAEEQAPDPDTAERPAELRGSVSLEN
VSFRYDPEKPLIEDLSLSVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDAARMTRDELRSAIGMVLQDTW
LFGGTIAENIAYGASREVTREEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSTGEKQLITIARAFLSDPVILVLDEA
TSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHDELLAAGGAYARLYAAQFAQALAEV
D

Nucleotide


Download         Length: 1926 bp        

>NTDB_id=659480 OG206_RS22555 WP_327118908.1 5137931..5139856(-) (rcrQ) [Streptomyces sp. NBC_01341]
ATGGCCGGGCCTGGCGGACGGATGATGTCCATGGGACCCACCGAGAGGTCGATGGACTTCAAGGGGTCCGGGAAGCGGTT
GCTGAGACGGTTCAGCAAGGAGAAGTCGTCGCTGTCCCTGATGCTGGGGGCGGGGACGCTGAGCGTGGCGCTCTCCGTGG
CGGGGCCGAAGATCCTCGGTTCTGCCACGGACCTGATCTTCGCCGGGGTCGTGGGCCGGGAGCTGCCGAAGGGCACGACG
AAGGAGCAGGCCGTCGAGAACCTGCGGGAGAAGGGCAGCGGCGGTCTCGCGGACGTGCTGTCCGGGGTGGACTTCACCCC
CGGCAGCGGCATCGACTTCGGAGCGGTGGGCAACGTCCTTCTGGTGGCGCTGGCGGTGTACGTCGCCGCGGGACTGCTGA
TGCTGGTGTCGACACGGGTCTCGATCAGGGTCATCAACCGGGTCGTGTTCCAGCTGCGCGAGGACCTGCAGACGAAGCTG
GCGCGGCTGCCGCTGTCGTACTTCGACCGGCAGCAGCGCGGTGAGGTGCTCAGCCGCGCGACGAACGACATCGACAACAT
CTCGCAGACGATGCAGCAGACGATGGGCCAGCTCATCAACTCCCTGCTCACCATCGTCGGCGTACTGATCATGATGTTCT
GGATCTCTCCGCTGCTGGCCCTGGTGGCGCTGGTGACGATCCCGCTGTCGGTGGTCGTCGCGACGCGGATCGGGAAACGC
TCGCAGCCGCACTTCGTGGCGCAGTGGAAGGTGACGGGCGCGCTCAACGCGCACATCGAGGAGATGTACACCGGCCACAC
GCTGGTCAAGACGTTCGGGCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGACGCGCTCTACGAGGCCGGCT
TCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCCCTGATGATGTTCGTGTCCAACCTGAACTACGTCCTGGTCGCGGTC
GTCGGTGGTCTGCGGGTGGCGTCGGGCTCCCTGTCGATCGGTGACGTACAGGCGTTCATCCAGTACTCCCGGCAGTTCTC
GATGCCGCTGACCCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGCATCGCGTCGGCCGAGCGGGTCTTCGGCCTGC
TGGACGCCGAGGAGCAGGCGCCCGACCCGGACACGGCCGAGCGGCCCGCGGAGCTGCGCGGCAGCGTCTCGCTGGAGAAC
GTGTCCTTCAGGTACGACCCCGAGAAGCCGCTCATCGAGGACCTCTCGCTGAGCGTGGAGCCGGGCCACACGGTCGCGAT
CGTCGGACCGACCGGCGCGGGCAAGACGACACTGGTCAATCTCCTGATGCGGTTCTACGAGGTGACGGGCGGCCGCATCA
CCCTCGACGGGGTCGACGCCGCGCGGATGACGCGCGACGAACTCCGTTCGGCCATAGGCATGGTGCTCCAGGACACCTGG
CTGTTCGGCGGCACGATCGCGGAGAACATCGCGTACGGCGCCTCGCGCGAGGTCACCCGGGAGGAGATCGAGGAGGCGGC
GCGCGCGGCCCACGCCGACCGCTTCGTCCGTACGCTGCCGGACGGCTACGACACCGTGATCGACGACGAGGGATCAGGGG
TCAGCACGGGTGAGAAGCAGCTGATCACGATCGCCCGGGCGTTCCTCTCCGACCCGGTGATCCTGGTGCTCGACGAGGCC
ACCAGCTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCACGGCTGGCTCACGGCCGTACGAGCTTCGT
GATCGCGCACCGCCTCTCCACCATCCGGGACGCCGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTCGAACAGGGCA
CGCACGACGAACTGCTGGCGGCCGGCGGCGCCTACGCCCGGCTGTACGCGGCGCAGTTCGCGCAGGCACTGGCGGAGGTC
GACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(57-350)

ABC transporter (ABC_tran)

(413-562)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

43.939

82.371

0.362