Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   MKK05_RS24095 Genome accession   NZ_CP092634
Coordinates   5180262..5180819 (+) Length   185 a.a.
NCBI ID   WP_003110422.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain LS.2c     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5175262..5185819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKK05_RS24075 (MKK05_24075) pilR 5176538..5177875 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  MKK05_RS24080 (MKK05_24080) thiO 5177921..5179015 (-) 1095 WP_033995405.1 glycine oxidase ThiO -
  MKK05_RS24085 (MKK05_24085) - 5179150..5179659 (+) 510 WP_003134932.1 Tfp pilus assembly protein FimT/FimU -
  MKK05_RS24090 (MKK05_24090) - 5179765..5180271 (+) 507 WP_023098086.1 Tfp pilus assembly protein FimT/FimU -
  MKK05_RS24095 (MKK05_24095) pilV 5180262..5180819 (+) 558 WP_003110422.1 type 4a pilus minor pilin PilV Machinery gene
  MKK05_RS24100 (MKK05_24100) pilW 5180816..5181640 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  MKK05_RS24105 (MKK05_24105) pilX 5181637..5182224 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  MKK05_RS24110 (MKK05_24110) pilY1 5182236..5185721 (+) 3486 WP_003134937.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20072.23 Da        Isoelectric Point: 7.9204

>NTDB_id=659444 MKK05_RS24095 WP_003110422.1 5180262..5180819(+) (pilV) [Pseudomonas aeruginosa strain LS.2c]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLMSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=659444 MKK05_RS24095 WP_003110422.1 5180262..5180819(+) (pilV) [Pseudomonas aeruginosa strain LS.2c]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGATGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTTGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.378

100

0.984