Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG311_RS27640 Genome accession   NZ_CP108362
Coordinates   6026140..6026931 (-) Length   263 a.a.
NCBI ID   WP_030859621.1    Uniprot ID   A0ABS8E4C5
Organism   Streptomyces sp. NBC_01343     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6021140..6031931
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG311_RS27625 (OG311_27645) - 6021209..6022018 (+) 810 WP_327133843.1 GNAT family N-acetyltransferase -
  OG311_RS27630 (OG311_27650) - 6022102..6023982 (+) 1881 WP_327133844.1 IucA/IucC family siderophore biosynthesis protein -
  OG311_RS27635 (OG311_27655) - 6024035..6026005 (+) 1971 WP_327133845.1 ATP-dependent DNA helicase -
  OG311_RS27640 (OG311_27660) dinR/lexA 6026140..6026931 (-) 792 WP_030859621.1 transcriptional repressor LexA Regulator
  OG311_RS27645 (OG311_27665) nrdR 6027404..6027916 (+) 513 WP_327133846.1 transcriptional regulator NrdR -
  OG311_RS27650 (OG311_27670) - 6028049..6030937 (+) 2889 WP_327133847.1 vitamin B12-dependent ribonucleotide reductase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 28528.32 Da        Isoelectric Point: 7.4240

>NTDB_id=659425 OG311_RS27640 WP_030859621.1 6026140..6026931(-) (dinR/lexA) [Streptomyces sp. NBC_01343]
MTTTADSATITAQNRSQSRLEPVHPMNDASLNPEPEPARPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYPP
SMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAEE
SVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHNA
AYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 792 bp        

>NTDB_id=659425 OG311_RS27640 WP_030859621.1 6026140..6026931(-) (dinR/lexA) [Streptomyces sp. NBC_01343]
GTGACCACCACAGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATCCCATGAA
CGACGCAAGTCTGAACCCGGAGCCGGAGCCCGCGCGCCCCGCGCGCTCGCTGCCAGGCCGACCTCCAGGCATCCGCGCCG
ACAGCTCCGGGCTCACGGACAGGCAGCGCAGGGTCATCGAGGTCATCCGCGACTCGGTGCAGCGGCGCGGATACCCGCCG
TCGATGCGTGAGATCGGCCAGGCGGTCGGCCTGTCCAGCACGTCGTCGGTGGCCCACCAGCTGATGGCCCTGGAGCGCAA
GGGCTTCCTGCGCCGGGACCCGCACCGCCCCCGGGCGTACGAGGTCCGCGGCTCCGACCAGCCCAGCTCGCAGCCCACGG
ACACCACCGGCAAGCCCGCCGCCTCGTACGTACCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAGGAG
TCGGTGGAGGACGTGTTCCCGCTCCCCCGCCAGCTCGTCGGCGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGTGACTC
GATGATCGAAGCCGCGATCTGCGACGGGGACTGGGTCACGGTCCGCCGCCAGCCGGTCGCGGAGAACGGCGACATCGTCG
CCGCGATGCTCGACGGCGAGGCCACGGTCAAGCGCTTCAAGCGCGAGGACGGGCACGTCTGGCTGCTCCCGCACAACGCC
GCCTACCAGCCGATCCCCGGTGACGAGGCGACCATCCTCGGCAAGGTCGTCGCGGTACTGCGCCGAGTCTGA

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(56-119)

Peptidase S24-like (Peptidase_S24)

(145-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.608

0.376