Detailed information NTG0659421

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: MKK05_RS02020
• Genome accession: NZ_CP092634
• Coordinates: 429537..430685 (+)
• Length: 382 a.a.
• NCBI ID: WP_003110016.1
• Uniprot ID: A0A0H2ZL88
• Organism: Pseudomonas aeruginosa strain LS.2c
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 424537..435685

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MKK05_RS01995 (MKK05_01995)	-	425688..425984 (-)	297	WP_031628111.1	DUF167 domain-containing protein	-
MKK05_RS02000 (MKK05_02000)	-	425981..426574 (-)	594	WP_003084544.1	YggT family protein	-
MKK05_RS02005 (MKK05_02005)	proC	426585..427406 (-)	822	WP_003084546.1	pyrroline-5-carboxylate reductase	-
MKK05_RS02010 (MKK05_02010)	-	427418..428110 (-)	693	WP_003084549.1	YggS family pyridoxal phosphate-dependent enzyme	-
MKK05_RS02015 (MKK05_02015)	pilT	428325..429359 (+)	1035	WP_003084552.1	type IV pilus twitching motility protein PilT	Machinery gene
MKK05_RS02020 (MKK05_02020)	pilU	429537..430685 (+)	1149	WP_003110016.1	type IV pilus ATPase PilU	Machinery gene
MKK05_RS02025 (MKK05_02025)	czcD	430693..431592 (-)	900	WP_003100957.1	CDF family zinc transporter CzcD	-
MKK05_RS02030 (MKK05_02030)	-	431747..432151 (+)	405	WP_003084560.1	NINE protein	-
MKK05_RS02035 (MKK05_02035)	-	432394..433767 (+)	1374	WP_004365040.1	pyridoxal-phosphate dependent enzyme	-
MKK05_RS02040 (MKK05_02040)	-	433764..434948 (+)	1185	WP_003110017.1	cystathionine gamma-synthase	-

Sequence

Protein

• Length: 382 a.a.
• Molecular weight: 42559.83 Da
• Isoelectric Point: 6.7792

>NTDB_id=659421 MKK05_RS02020 WP_003110016.1 429537..430685(+) (pilU) [Pseudomonas aeruginosa strain LS.2c]
MEFEKLLRLMVEKGGSDLFITAGVPPSMKVNGRVMPVTKTPLSPEQTRETVLGVMNEQQRRDFAENHECNFAISARGIGR
FRVSAFYQRNLVGMVLRRIETNIPTLEELKLPEILKKLALTKRGLVIFVGATGTGKSTSLAAMIGYRNKNSTGHIISIED
PIEYIHQHQGCIVTQREVGLDTDSFEVALKNTLRQAPDVIMIGEVRSRETMDHAVAFAETGHLCLATLHANNANQALERI
IHFFPADRHGQVWMDLSLNLKAIVAQQLVPTPDGKGRRAVIEVLLNTPLAADLIRKGEVHELKPLMKRSTEQGMQTFDQA
LYQLYTQGEITYEDALAHADSANDLRLMIKLGSESDADHLSNLTQGLSLEITDDDPAGRRFR

Nucleotide

• Length: 1149 bp

>NTDB_id=659421 MKK05_RS02020 WP_003110016.1 429537..430685(+) (pilU) [Pseudomonas aeruginosa strain LS.2c]
ATGGAATTCGAAAAGCTGCTGCGCCTGATGGTGGAAAAGGGCGGCTCCGACCTGTTCATCACCGCCGGCGTACCGCCGTC
GATGAAGGTCAACGGCCGGGTGATGCCGGTGACCAAGACGCCGCTGTCGCCGGAGCAGACCCGCGAGACCGTGCTAGGCG
TGATGAACGAGCAGCAGCGCCGCGATTTCGCCGAGAACCATGAGTGCAACTTCGCCATCAGCGCCCGCGGCATCGGCCGC
TTCCGGGTCAGTGCCTTCTACCAGCGCAACCTGGTGGGCATGGTATTGCGCCGGATCGAGACCAACATCCCGACCCTGGA
AGAGCTGAAGCTCCCGGAAATCCTCAAGAAGCTGGCGCTGACCAAGCGCGGCCTGGTGATCTTCGTCGGCGCCACCGGCA
CCGGCAAGTCCACCTCGCTGGCGGCGATGATCGGCTACCGCAACAAGAACTCCACCGGGCACATCATCTCCATCGAGGAC
CCGATCGAGTACATCCACCAGCACCAGGGCTGCATCGTCACCCAGCGCGAGGTGGGGCTGGACACCGACTCCTTCGAGGT
GGCGCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCATGATCGGCGAGGTGCGCTCGCGGGAGACCATGGACCATG
CCGTGGCCTTCGCCGAGACCGGCCACCTGTGCCTGGCGACCCTGCACGCGAACAACGCCAACCAGGCGCTGGAGCGGATC
ATCCACTTCTTCCCGGCCGATCGTCATGGCCAGGTGTGGATGGACCTGTCGCTGAACCTCAAGGCCATCGTCGCCCAGCA
ACTGGTGCCGACCCCCGACGGCAAGGGGCGGCGGGCGGTGATCGAGGTGCTGCTGAACACCCCGCTGGCCGCCGACCTGA
TCCGCAAGGGCGAGGTGCACGAGCTGAAGCCGCTGATGAAGCGCTCCACCGAGCAGGGCATGCAGACCTTCGACCAGGCG
CTGTACCAGCTCTACACCCAGGGCGAGATCACCTACGAGGACGCCCTGGCCCACGCCGACTCGGCCAACGACCTGCGCCT
GATGATCAAGCTCGGTTCGGAAAGCGACGCCGACCACCTGTCGAACCTGACCCAGGGCCTGAGCCTGGAAATCACCGACG
ACGACCCTGCCGGCCGGCGCTTCCGCTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-270)

3D structure

• AlphaFold DB: A0A0H2ZL88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	88.22	100	0.882
pilU	Acinetobacter baylyi ADP1	65.266	93.455	0.61
pilU	Vibrio cholerae strain A1552	60.286	91.623	0.552
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	43.068	88.743	0.382