Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG311_RS26805 Genome accession   NZ_CP108362
Coordinates   5824365..5825585 (+) Length   406 a.a.
NCBI ID   WP_327133751.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01343     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5819365..5830585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG311_RS26790 (OG311_26810) - 5820188..5821618 (+) 1431 WP_327133749.1 sugar porter family MFS transporter -
  OG311_RS26795 (OG311_26815) - 5821660..5822646 (-) 987 WP_327133750.1 LLM class flavin-dependent oxidoreductase -
  OG311_RS26800 (OG311_26820) - 5822710..5824221 (-) 1512 Protein_5274 cytosine permease -
  OG311_RS26805 (OG311_26825) pilA 5824365..5825585 (+) 1221 WP_327133751.1 signal recognition particle-docking protein FtsY Machinery gene
  OG311_RS26810 (OG311_26830) - 5825656..5826324 (-) 669 WP_327133752.1 bifunctional DNA primase/polymerase -
  OG311_RS26815 (OG311_26835) - 5826720..5828243 (+) 1524 WP_327133753.1 hypothetical protein -
  OG311_RS26820 (OG311_26840) - 5828560..5829903 (+) 1344 WP_229336259.1 ammonium transporter -
  OG311_RS26825 (OG311_26845) - 5829900..5830238 (+) 339 WP_030162445.1 P-II family nitrogen regulator -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 42474.60 Da        Isoelectric Point: 4.3984

>NTDB_id=659421 OG311_RS26805 WP_327133751.1 5824365..5825585(+) (pilA) [Streptomyces sp. NBC_01343]
MDILILAVVIALVAVGAISGLVVSSRKKKQLPPSAPSSTPTITAPPAEPQVGEDAVETAEEPRRTIEEVVLPEAEAAAPE
APAVVAEPEAPAAPEIEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQELVD
RLRERVKVLGTRTPADLRALLKEELLTLVGTDFDRAVKTESGMDTPGVVMVVGVNGTGKTTTTGKLARVLVADGRSVVLG
AADTFRAAAADQLQTWGDRVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEKH
GPLDEVLLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVVAVQRELGVPVKLVGLGEGPDDLAPFEPEAFV
DALIGD

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=659421 OG311_RS26805 WP_327133751.1 5824365..5825585(+) (pilA) [Streptomyces sp. NBC_01343]
ATGGACATCCTCATCCTTGCTGTAGTCATCGCCCTGGTCGCGGTCGGCGCGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCCTCGGCGCCGTCGAGCACGCCGACCATCACTGCCCCGCCCGCCGAACCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAGCCCCGCCGCACGATCGAGGAGGTCGTCCTCCCCGAAGCGGAGGCTGCGGCTCCCGAG
GCGCCCGCCGTCGTCGCCGAGCCCGAGGCGCCGGCCGCCCCCGAGATCGAGGTGCCCGAGCCCACCGCCGGCCGCCTGGT
CCGGCTGCGCGCCCGCCTCGCCCGGTCGCAGAACTCGCTCGGCAAGGGGCTGCTCACGCTGCTCTCGCGCGAGCACCTCG
ACGAGGACACCTGGGAGGAGATCGAGGAGACCCTCCTGATCGCCGACGTCGGTGTCGTGCCGACGCAGGAGCTCGTGGAC
CGGCTCCGCGAGCGGGTCAAGGTGCTCGGCACCCGCACCCCGGCGGACCTGCGCGCCCTGCTCAAGGAGGAGCTGCTGAC
CCTGGTCGGCACCGACTTCGACCGCGCCGTGAAGACCGAGAGCGGCATGGACACCCCGGGCGTCGTGATGGTCGTCGGCG
TCAACGGCACCGGCAAGACCACCACCACGGGCAAGCTGGCCCGCGTGCTCGTCGCGGACGGCCGCTCCGTGGTGCTGGGC
GCGGCCGACACCTTCCGCGCCGCCGCCGCCGACCAGCTCCAGACCTGGGGCGACCGCGTGGGCGCCCGCACGGTACGCGG
CCCCGAGGGCGGCGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGCTCA
TCGACACCGCCGGCCGCCTCCACACCAAGACCGGGCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAGCAC
GGCCCGCTGGACGAGGTCCTGCTGGTCCTGGACGCCACCACCGGGCAGAACGGCCTGACCCAGGCCCGCGTCTTCGCCGA
GGTCGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCGTCGCCGTCCAGCGCG
AGCTCGGCGTCCCGGTCAAGCTCGTCGGCCTCGGCGAGGGCCCCGACGACCTCGCGCCCTTCGAGCCGGAGGCGTTCGTG
GACGCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, GTPase domain (SRP54)

(207-404)

SRP54-type protein, helical bundle domain (SRP54_N)

(120-185)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

39.467

100

0.401