Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   MKK01_RS17575 Genome accession   NZ_CP092632
Coordinates   3604446..3605042 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola subsp. variicola strain ML.9ba2     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3599446..3610042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKK01_RS17560 (MKK01_17560) helD 3599654..3601708 (-) 2055 WP_012968608.1 DNA helicase IV -
  MKK01_RS17565 (MKK01_17565) - 3601833..3602279 (+) 447 WP_012542294.1 YccF domain-containing protein -
  MKK01_RS17570 (MKK01_17570) yccS 3602297..3604432 (+) 2136 WP_008805895.1 YccS family putative transporter -
  MKK01_RS17575 (MKK01_17575) sxy/tfoX 3604446..3605042 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  MKK01_RS17580 (MKK01_17580) sulA 3605393..3605902 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  MKK01_RS17585 (MKK01_17585) ompA 3606255..3607307 (+) 1053 WP_008805892.1 porin OmpA -
  MKK01_RS17590 (MKK01_17590) matP 3607418..3607867 (-) 450 WP_049158034.1 macrodomain Ter protein MatP -
  MKK01_RS17595 (MKK01_17595) - 3608053..3609810 (+) 1758 WP_012968609.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=659410 MKK01_RS17575 WP_012542296.1 3604446..3605042(-) (sxy/tfoX) [Klebsiella variicola subsp. variicola strain ML.9ba2]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=659410 MKK01_RS17575 WP_012542296.1 3604446..3605042(-) (sxy/tfoX) [Klebsiella variicola subsp. variicola strain ML.9ba2]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAACGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505