Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   MKS87_RS13725 Genome accession   NZ_CP092631
Coordinates   2629651..2630418 (-) Length   255 a.a.
NCBI ID   WP_015384118.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2624651..2635418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS13705 (MKS87_13705) ppsR 2624825..2625637 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  MKS87_RS13710 (MKS87_13710) ccpN 2625663..2626301 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  MKS87_RS13715 (MKS87_13715) glyS 2626434..2628473 (-) 2040 WP_173614192.1 glycine--tRNA ligase subunit beta -
  MKS87_RS13720 (MKS87_13720) glyQ 2628466..2629353 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  MKS87_RS13725 (MKS87_13725) recO 2629651..2630418 (-) 768 WP_015384118.1 DNA repair protein RecO Machinery gene
  MKS87_RS13730 (MKS87_13730) yqzL 2630455..2630598 (-) 144 WP_003230053.1 YqzL family protein -
  MKS87_RS13735 (MKS87_13735) era 2630746..2631651 (-) 906 WP_003230051.1 GTPase Era -
  MKS87_RS13740 (MKS87_13740) cdd 2631632..2632042 (-) 411 WP_003230049.1 cytidine deaminase -
  MKS87_RS13745 (MKS87_13745) unpK 2632161..2632532 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  MKS87_RS13750 (MKS87_13750) ybeY 2632513..2632986 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  MKS87_RS13755 (MKS87_13755) pgpH 2632987..2635122 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29332.01 Da        Isoelectric Point: 8.3080

>NTDB_id=659366 MKS87_RS13725 WP_015384118.1 2629651..2630418(-) (recO) [Bacillus subtilis strain YB-15]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKSNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=659366 MKS87_RS13725 WP_015384118.1 2629651..2630418(-) (recO) [Bacillus subtilis strain YB-15]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGTC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.216

100

0.992