Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   MKS87_RS12210 Genome accession   NZ_CP092631
Coordinates   2362683..2363303 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2357683..2368303
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS12170 (MKS87_12170) ypqE 2358817..2359323 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  MKS87_RS12175 (MKS87_12175) ypqA 2359461..2359880 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  MKS87_RS12180 (MKS87_12180) yppG 2359901..2360278 (-) 378 WP_004398696.1 YppG family protein -
  MKS87_RS12185 (MKS87_12185) yppF 2360465..2360653 (+) 189 WP_003230690.1 YppF family protein -
  MKS87_RS12190 (MKS87_12190) yppE 2360692..2361063 (-) 372 WP_003246080.1 YppE family protein -
  MKS87_RS12195 (MKS87_12195) yppD 2361109..2361354 (-) 246 WP_004398488.1 YppD family protein -
  MKS87_RS12200 (MKS87_12200) sspM 2361551..2361655 (+) 105 WP_240304207.1 acid-soluble spore protein SspM -
  MKS87_RS12205 (MKS87_12205) yppC 2361680..2362642 (-) 963 WP_015251830.1 DUF2515 domain-containing protein -
  MKS87_RS12210 (MKS87_12210) recU 2362683..2363303 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  MKS87_RS12215 (MKS87_12215) ponA 2363325..2366084 (+) 2760 WP_038429203.1 PBP1A family penicillin-binding protein -
  MKS87_RS12220 (MKS87_12220) ypoC 2366160..2366654 (-) 495 WP_009967579.1 YpoC family protein -
  MKS87_RS12225 (MKS87_12225) nth 2366651..2367310 (-) 660 WP_009967580.1 endonuclease III -
  MKS87_RS12230 (MKS87_12230) dnaD 2367329..2368027 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=659354 MKS87_RS12210 WP_004399067.1 2362683..2363303(+) (recU) [Bacillus subtilis strain YB-15]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=659354 MKS87_RS12210 WP_004399067.1 2362683..2363303(+) (recU) [Bacillus subtilis strain YB-15]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCACATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1