Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MKS87_RS07845 Genome accession   NZ_CP092631
Coordinates   1495444..1495722 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain YB-15     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1490444..1500722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS07825 (MKS87_07825) - 1491632..1492543 (+) 912 WP_038427635.1 ketopantoate reductase family protein -
  MKS87_RS07830 (MKS87_07830) ampS 1492577..1493809 (-) 1233 WP_003232341.1 aminopeptidase -
  MKS87_RS07835 (MKS87_07835) ykpC 1493918..1494052 (-) 135 WP_003238865.1 protein YkpC -
  MKS87_RS07840 (MKS87_07840) mreBH 1494153..1495160 (-) 1008 WP_029727190.1 cell shape-determining protein MreBH -
  MKS87_RS07845 (MKS87_07845) abrB 1495444..1495722 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  MKS87_RS07850 (MKS87_07850) kinC 1495912..1497198 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  MKS87_RS07855 (MKS87_07855) ykqA 1497214..1498041 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  MKS87_RS07860 (MKS87_07860) ktrC 1498104..1498769 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  MKS87_RS07865 (MKS87_07865) ade 1498925..1500658 (+) 1734 WP_032721495.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=659348 MKS87_RS07845 WP_003244728.1 1495444..1495722(+) (abrB) [Bacillus subtilis strain YB-15]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=659348 MKS87_RS07845 WP_003244728.1 1495444..1495722(+) (abrB) [Bacillus subtilis strain YB-15]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576