Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG625_RS26450 Genome accession   NZ_CP108356
Coordinates   5752706..5754439 (-) Length   577 a.a.
NCBI ID   WP_329385940.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01351     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5747706..5759439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG625_RS26430 (OG625_26465) - 5748407..5749348 (-) 942 WP_329385930.1 hypothetical protein -
  OG625_RS26435 (OG625_26470) - 5749447..5749803 (-) 357 WP_329385932.1 beta/gamma crystallin domain-containing protein -
  OG625_RS26440 (OG625_26475) - 5750161..5750661 (+) 501 WP_329385936.1 helix-turn-helix transcriptional regulator -
  OG625_RS26445 (OG625_26480) rcrQ 5750787..5752709 (-) 1923 WP_329385938.1 ABC transporter ATP-binding protein Regulator
  OG625_RS26450 (OG625_26485) rcrP 5752706..5754439 (-) 1734 WP_329385940.1 ABC transporter ATP-binding protein Regulator
  OG625_RS26455 (OG625_26490) - 5754584..5756032 (-) 1449 WP_329385942.1 FGGY family carbohydrate kinase -
  OG625_RS26460 (OG625_26495) - 5756128..5756433 (-) 306 WP_329385944.1 YtxH domain-containing protein -
  OG625_RS26480 (OG625_26515) - 5757089..5758246 (-) 1158 WP_329385947.1 glutamate--cysteine ligase -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62614.47 Da        Isoelectric Point: 5.1501

>NTDB_id=659337 OG625_RS26450 WP_329385940.1 5752706..5754439(-) (rcrP) [Streptomyces sp. NBC_01351]
MLIRLLRTHLRPYKKPIAALVLLQLLQTSASLYLPTLNADIIDNGVVNGDTGYILRFGALMLGVSLVQLVCNAGAVYYGA
RTAAAVGRDIRGAVFDRVQSFSARELGQFGAPSLITRTTNDVQQIQMLVLMTFTLMVSAPIMCVGGIFMALSLDVQLSGV
LLAVVPVLGLSVGAIVFKTRPLFRQMQDRLDTVNRVLREQITGNRVIRAFVRDDYEKDRFRDANADLTGVSLAAGKLLAY
MFPTVILVVNISSVAVIWFGAMRIDSGDMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERVQEVLDTHSSVVP
PADPVRELSRHGLLELRGADFRYPGAEAPVLRGVSLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGDVLVDGEDVR
RLDPELLARTVGMVPQKPYLFSGTVASNLRYGRPDATDEELWHALEVAQAKDFVSALEGGLEAPVTQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETEDATVVIVAQRVSTIRDADRIIVLDEGEVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=659337 OG625_RS26450 WP_329385940.1 5752706..5754439(-) (rcrP) [Streptomyces sp. NBC_01351]
GTGCTCATACGACTTCTGCGGACCCACCTCCGTCCGTACAAGAAACCCATCGCCGCGCTGGTGCTGCTGCAACTGCTGCA
GACCAGCGCGAGCCTCTACCTGCCCACGCTCAACGCGGACATCATCGACAACGGTGTCGTCAACGGGGACACCGGCTACA
TCCTGCGCTTCGGCGCACTGATGCTCGGCGTCTCGCTCGTCCAGCTCGTCTGCAACGCCGGGGCCGTGTACTACGGCGCC
CGTACCGCGGCCGCCGTCGGCCGCGACATCCGCGGGGCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCGCGGGAGCTCGG
CCAGTTCGGCGCTCCGTCGCTGATCACCCGTACGACGAACGACGTCCAGCAGATCCAGATGCTGGTGCTGATGACCTTCA
CGCTGATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCTTCATGGCGCTCTCGCTCGACGTGCAGCTGTCGGGCGTG
CTGCTCGCCGTGGTCCCCGTGCTCGGCCTCTCGGTCGGCGCGATCGTCTTCAAGACGCGGCCGCTGTTCCGGCAGATGCA
GGACCGGCTCGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGTAACCGGGTGATCCGGGCCTTCGTCCGCGACG
ACTACGAGAAGGACCGTTTCCGCGACGCCAACGCGGACCTGACCGGTGTCTCGCTGGCCGCGGGCAAGCTGCTGGCGTAC
ATGTTCCCGACCGTGATCCTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGTGCGATGCGCATCGACAGCGG
CGACATGGAGATCGGCCAGCTGACGGCCTTCCTCGCCTACCTGATGCAGATCGTCATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGTGCCGAGCGCGTCCAGGAGGTCCTGGACACCCACTCCAGCGTGGTCCCG
CCCGCGGACCCGGTGCGCGAGCTCTCCCGCCACGGGCTGCTGGAGCTGCGCGGTGCCGACTTCCGCTACCCGGGCGCCGA
GGCCCCCGTGCTGCGCGGGGTGAGCCTGGTGGCGCGCCCCGGCGAGACCACCGCCGTGATCGGCTCCACCGGAAGCGGCA
AGTCCACGCTGCTGGGTCTGGTACCGCGACTGTTCGACGCGACCGGCGGCGACGTACTGGTCGACGGGGAGGACGTGCGC
CGGCTCGACCCGGAGCTGCTGGCCAGGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTCTTCTCCGGAACGGTCGCTTC
CAACCTCCGTTACGGGCGCCCCGACGCGACCGACGAAGAGCTCTGGCACGCCCTGGAAGTGGCGCAGGCCAAGGACTTCG
TGTCCGCGCTGGAGGGCGGGCTCGAAGCCCCCGTCACCCAGGGCGGCACCAATGTCTCCGGCGGCCAGCGCCAGCGCCTG
GCCATCGCCCGGACGCTCGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTCGCCCGCGAGACCGAGGACGCGACCGTGGTCATCGTCGCCCAGCGGGTCTCCACGATCC
GTGACGCCGACCGGATCATCGTGCTCGACGAGGGCGAGGTCGTGGGCGAGGGGCGCCACCACGAGCTGATGGCCGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.105

98.96

0.397