Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG625_RS26445 Genome accession   NZ_CP108356
Coordinates   5750787..5752709 (-) Length   640 a.a.
NCBI ID   WP_329385938.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01351     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5745787..5757709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG625_RS26420 (OG625_26455) - 5745980..5746714 (-) 735 WP_329390962.1 ABC transporter ATP-binding protein -
  OG625_RS26425 (OG625_26460) - 5746789..5748318 (-) 1530 WP_329385928.1 peptidoglycan-binding protein -
  OG625_RS26430 (OG625_26465) - 5748407..5749348 (-) 942 WP_329385930.1 hypothetical protein -
  OG625_RS26435 (OG625_26470) - 5749447..5749803 (-) 357 WP_329385932.1 beta/gamma crystallin domain-containing protein -
  OG625_RS26440 (OG625_26475) - 5750161..5750661 (+) 501 WP_329385936.1 helix-turn-helix transcriptional regulator -
  OG625_RS26445 (OG625_26480) rcrQ 5750787..5752709 (-) 1923 WP_329385938.1 ABC transporter ATP-binding protein Regulator
  OG625_RS26450 (OG625_26485) rcrP 5752706..5754439 (-) 1734 WP_329385940.1 ABC transporter ATP-binding protein Regulator
  OG625_RS26455 (OG625_26490) - 5754584..5756032 (-) 1449 WP_329385942.1 FGGY family carbohydrate kinase -
  OG625_RS26460 (OG625_26495) - 5756128..5756433 (-) 306 WP_329385944.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 68675.18 Da        Isoelectric Point: 5.4088

>NTDB_id=659336 OG625_RS26445 WP_329385938.1 5750787..5752709(-) (rcrQ) [Streptomyces sp. NBC_01351]
MSGPGGRMMMGPAQRTLDFKGSGKRLLGQLAQDRAKLWGMVAAVVGSVGCAVVGPKILGEATDLVFAGIVGRELPAGISK
QQALDGMRAKGEGGMADMLSGTDFTPGKGIDFGAVGVVAIWALVVFVLAGLLMLVATRLSNHVMNGTVYRMREELQAKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVAAKIGKKS
QPQFVAQWKTTGALNAHIEEMYSGHNLVKVFGRHKESAAVFAEHNEALYRATFKAQLVSGFMQPVMFFISNINYVLVAVV
GGLKVASGTLSIGDVQAFIQYSRQFSMPLSQVASMANLVQSGVASAERVYELLDTEEQEPDAEVPERPEVLRGQVTLDKV
AFRYEPDKPLIENLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGEIGLDGVDIAKMTREELRGSIGMVLQDTWL
FGGTIAENIAYGASREVTRAEIEEAARAAHADRFVRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMESGSIVEQGTHEELLASGGAYARLYAAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=659336 OG625_RS26445 WP_329385938.1 5750787..5752709(-) (rcrQ) [Streptomyces sp. NBC_01351]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGGCCCAGCGGACCCTGGATTTCAAGGGATCGGGCAAGCGGCTGCT
GGGCCAGCTCGCGCAGGACCGGGCCAAGCTGTGGGGCATGGTCGCGGCCGTCGTCGGCAGCGTCGGCTGCGCGGTGGTCG
GCCCGAAGATCCTCGGCGAGGCCACCGACCTGGTGTTCGCGGGGATCGTCGGCCGCGAGCTGCCGGCCGGCATCAGCAAG
CAGCAGGCGCTGGACGGGATGCGCGCCAAGGGCGAGGGCGGGATGGCGGACATGCTGTCCGGCACCGACTTCACCCCGGG
CAAGGGCATCGACTTCGGCGCGGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTCTTCGTCCTGGCCGGTCTGCTGATGC
TGGTGGCGACGCGGCTGTCGAACCACGTCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTCCAGGCGAAGCTGTCG
CGGCTGCCGCTCTCGTACTTCGACCAGCAGAAGCGCGGCGAGGTGCTCAGCCGGGCCACGAACGACATCGACAACATCGG
GCAGACGCTCCAGCAGACGATGGGGCAGCTGCTGAACTCGCTGCTGACCATCGTCGGCGTGCTCGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTACCGGTCTCGGTGTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCTCAGTTCGTCGCGCAGTGGAAGACGACCGGCGCGCTCAACGCCCACATCGAGGAGATGTACTCGGGGCACAACCT
GGTCAAGGTCTTCGGCCGGCACAAGGAATCCGCGGCGGTCTTCGCCGAGCACAACGAGGCGCTGTACCGGGCCACGTTCA
AGGCGCAGTTGGTCAGCGGGTTCATGCAGCCGGTGATGTTCTTCATATCGAACATCAACTACGTGCTGGTCGCGGTCGTC
GGCGGTCTGAAGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGGCAGTTCTCGAT
GCCGCTGTCGCAGGTCGCGTCGATGGCGAACCTCGTGCAGTCCGGCGTCGCCTCGGCGGAGCGGGTATACGAGCTGCTGG
ACACGGAGGAGCAGGAGCCGGACGCGGAGGTTCCGGAGCGTCCGGAGGTGCTGCGCGGGCAGGTCACCCTCGACAAGGTG
GCCTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTTTCGCTGACGGTCGAGCCGGGGCACACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACCACCCTCGTCAACCTGCTGATGCGGTTCTACGAGGTCACGGGCGGGGAGATCGGCC
TGGACGGCGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCGGCTCCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACGATCGCGGAGAACATCGCCTACGGGGCTTCGCGCGAGGTGACGCGCGCCGAGATCGAGGAGGCGGCGCG
GGCGGCCCACGCCGACCGCTTCGTCCGCACGCTGCCGGACGGCTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCGGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTCCTGGACGAGGCGACG
AGCTCGGTCGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCACGGCTCGCGCACGGCCGTACGTCCTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAGCGGCTCGATCGTGGAACAGGGCACGC
ACGAGGAGCTGTTGGCCTCGGGCGGCGCGTACGCGCGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.032

97.188

0.389