Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MKS87_RS05675 Genome accession   NZ_CP092631
Coordinates   1094950..1095528 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain YB-15     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1089950..1100528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS87_RS05655 (MKS87_05655) hemAT 1090461..1091759 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  MKS87_RS05660 (MKS87_05660) yhfW 1091898..1093427 (-) 1530 WP_019712353.1 FAD-dependent oxidoreductase -
  MKS87_RS05665 (MKS87_05665) yhxC 1093539..1094396 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  MKS87_RS05670 (MKS87_05670) yhzC 1094424..1094657 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  MKS87_RS05675 (MKS87_05675) comK 1094950..1095528 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  MKS87_RS05680 (MKS87_05680) yhxD 1095575..1096474 (-) 900 WP_032721273.1 SDR family oxidoreductase -
  MKS87_RS05685 (MKS87_05685) yhjA 1096691..1096960 (+) 270 WP_017695342.1 excalibur calcium-binding domain-containing protein -
  MKS87_RS05690 (MKS87_05690) yhjB 1097003..1098472 (-) 1470 WP_032721274.1 sodium:solute symporter -
  MKS87_RS05695 (MKS87_05695) yhjC 1098469..1098669 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  MKS87_RS05700 (MKS87_05700) - 1098868..1099239 (-) 372 WP_014476361.1 hypothetical protein -
  MKS87_RS05705 (MKS87_05705) yhjE 1099391..1100014 (+) 624 WP_010886465.1 VTT domain-containing protein -
  MKS87_RS05710 (MKS87_05710) lepB 1100016..1100522 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=659334 MKS87_RS05675 WP_029317573.1 1094950..1095528(+) (comK) [Bacillus subtilis strain YB-15]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=659334 MKS87_RS05675 WP_029317573.1 1094950..1095528(+) (comK) [Bacillus subtilis strain YB-15]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTAAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995