NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	OG625_RS25765	Genome accession	NZ_CP108356
Coordinates	5601141..5601794 (+)	Length	217 a.a.
NCBI ID	WP_329385588.1	Uniprot ID	-
Organism	Streptomyces sp. NBC_01351
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 5596141..5606794

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OG625_RS25730 (OG625_25765)	-	5596569..5597030 (+)	462	WP_329385575.1	HD domain-containing protein	-
OG625_RS25735 (OG625_25770)	-	5597166..5597360 (+)	195	WP_150519620.1	hypothetical protein	-
OG625_RS25740 (OG625_25775)	-	5597484..5597945 (-)	462	WP_329385579.1	hypothetical protein	-
OG625_RS25755 (OG625_25790)	tig	5598757..5600142 (+)	1386	WP_329385582.1	trigger factor	-
OG625_RS25760 (OG625_25795)	-	5600448..5601065 (+)	618	WP_329385585.1	ATP-dependent Clp protease proteolytic subunit	-
OG625_RS25765 (OG625_25800)	clpP	5601141..5601794 (+)	654	WP_329385588.1	ATP-dependent Clp protease proteolytic subunit	Regulator
OG625_RS25770 (OG625_25805)	clpX	5601958..5603244 (+)	1287	WP_326590751.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
OG625_RS25775 (OG625_25810)	-	5603312..5604226 (-)	915	WP_329385594.1	hypothetical protein	-
OG625_RS25780 (OG625_25815)	-	5604360..5604998 (-)	639	WP_329385596.1	hypothetical protein	-

Sequence

Protein

Download Length: 217 a.a. Molecular weight: 23810.10 Da Isoelectric Point: 4.6762

                                >NTDB_id=659334 OG625_RS25765 WP_329385588.1 5601141..5601794(+) (clpP) [Streptomyces sp. NBC_01351]

MNNLSPASGLYSGPQVDNRYVIPRFVERTSQGVREYDPYAKLFEERVIFLGVQIDDASANDVMAQLLCLESMDPDRDISI

YINSPGGSFTALTAIYDTMQFVKPDIQTVCMGQAASAAAVLLAAGTPGKRMALPNARVLIHQPSGGTGREQLSDLEIAAN

EILRMRDQLETMLAKHSTTPIEKIRDDIERDKILTAEDALAYGLIDQIISTRKSSKS

Nucleotide

Download Length: 654 bp

                                >NTDB_id=659334 OG625_RS25765 WP_329385588.1 5601141..5601794(+) (clpP) [Streptomyces sp. NBC_01351]

ATGAACAACCTCTCTCCCGCGAGCGGCCTCTACTCCGGCCCGCAGGTGGACAACCGCTACGTCATCCCGCGCTTCGTCGA

GCGCACCTCGCAGGGCGTGCGCGAGTACGACCCGTACGCGAAGCTCTTCGAGGAGCGCGTGATCTTCCTCGGCGTGCAGA

TCGACGACGCCTCCGCCAACGACGTCATGGCGCAGCTGCTGTGCCTGGAGTCGATGGACCCGGACCGTGACATCTCGATC

TACATCAACAGCCCCGGTGGTTCCTTCACCGCGCTGACGGCGATCTACGACACGATGCAGTTCGTGAAGCCGGACATCCA

GACGGTCTGCATGGGCCAGGCGGCCTCCGCCGCCGCGGTCCTGCTCGCCGCCGGTACCCCCGGCAAGCGCATGGCCCTGC

CGAACGCCCGAGTGCTGATCCACCAGCCCTCCGGCGGTACCGGCCGCGAGCAGCTCTCCGACCTGGAGATCGCGGCCAAC

GAGATCCTGCGCATGCGCGACCAGCTGGAGACCATGCTGGCCAAGCACTCGACGACGCCGATCGAGAAGATCCGCGACGA

CATCGAGCGCGACAAGATCCTCACTGCCGAGGACGCTCTCGCGTACGGCCTGATCGACCAGATCATCTCCACGCGCAAGA

GCAGCAAGAGCTAG

Domains

Predicted by InterProScan.

Clp protease (CLP_protease)

(31-211)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	52.041	90.323	0.47
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	50	86.636	0.433
clpP	Streptococcus thermophilus LMD-9	46.392	89.401	0.415
clpP	Streptococcus pyogenes JRS4	46.392	89.401	0.415
clpP	Streptococcus pyogenes MGAS315	46.392	89.401	0.415
clpP	Streptococcus thermophilus LMG 18311	46.392	89.401	0.415
clpP	Streptococcus mutans UA159	46.842	87.558	0.41
clpP	Streptococcus pneumoniae Rx1	45.596	88.94	0.406
clpP	Streptococcus pneumoniae D39	45.596	88.94	0.406
clpP	Streptococcus pneumoniae TIGR4	45.596	88.94	0.406
clpP	Streptococcus pneumoniae R6	45.596	88.94	0.406
clpP	Lactococcus lactis subsp. cremoris KW2	45.55	88.018	0.401
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	44.503	88.018	0.392

Detailed information NTG0659334