Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | OG625_RS21705 | Genome accession | NZ_CP108356 |
| Coordinates | 4684346..4686871 (+) | Length | 841 a.a. |
| NCBI ID | WP_329383636.1 | Uniprot ID | - |
| Organism | Streptomyces sp. NBC_01351 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 4679346..4691871
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| OG625_RS21670 (OG625_21710) | - | 4680573..4680767 (+) | 195 | WP_329383618.1 | DUF397 domain-containing protein | - |
| OG625_RS21675 (OG625_21715) | - | 4680834..4681496 (+) | 663 | WP_329383621.1 | hypothetical protein | - |
| OG625_RS21680 (OG625_21720) | - | 4681511..4681675 (+) | 165 | WP_329383624.1 | hypothetical protein | - |
| OG625_RS21685 (OG625_21725) | - | 4681790..4682218 (+) | 429 | WP_329383627.1 | BlaI/MecI/CopY family transcriptional regulator | - |
| OG625_RS21690 (OG625_21730) | - | 4682230..4682769 (+) | 540 | WP_329383629.1 | amino-acid N-acetyltransferase | - |
| OG625_RS21695 (OG625_21735) | - | 4682936..4683271 (+) | 336 | WP_329383631.1 | Lsr2 family protein | - |
| OG625_RS21700 (OG625_21740) | - | 4683256..4683882 (-) | 627 | WP_329383633.1 | SCO3374 family protein | - |
| OG625_RS21705 (OG625_21745) | clpC | 4684346..4686871 (+) | 2526 | WP_329383636.1 | ATP-dependent Clp protease ATP-binding subunit | Regulator |
| OG625_RS21710 (OG625_21750) | - | 4687265..4687876 (+) | 612 | WP_329390837.1 | M23 family metallopeptidase | - |
| OG625_RS21715 (OG625_21755) | - | 4687889..4689007 (-) | 1119 | WP_329383638.1 | LamG-like jellyroll fold domain-containing protein | - |
| OG625_RS21720 (OG625_21760) | cseC | 4689230..4690537 (-) | 1308 | WP_329383640.1 | two-component system sensor histidine kinase CseC | - |
| OG625_RS21725 (OG625_21765) | cseB | 4690534..4691247 (-) | 714 | WP_329383642.1 | two-component system response regulator CseB | - |
Sequence
Protein
Download Length: 841 a.a. Molecular weight: 93049.20 Da Isoelectric Point: 5.7357
>NTDB_id=659320 OG625_RS21705 WP_329383636.1 4684346..4686871(+) (clpC) [Streptomyces sp. NBC_01351]
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYTGSGKESATAGGPAE
GTPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETL
KDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGA
TTLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYISDRFLPDKAIDL
IDEAGSRMRIRRMTAPPDLREFDEKIANVRRDKESAIDSQDFEKAASLRDTEKQLLAGKAKREKEWKSGDMDVVAEVDEE
LIAEVLATATGIPVFKLTEEESSRLLRMEDELHRRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTEL
SKTLAEFLFGDEDALIALDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQIL
EDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDTKTNYDRMKAKVNEELKQHFRPEFLNRVDDTVVFHQ
LTEEDIIQIVDLMLAKVDERLKDRDMGIELSGDAKQLLAKRGYDPIMGARPLRRTIQREIEDMLSEKILFGELRPGHIVV
VGVEGEGEEAKFTFRGEEKSALPDLPPIEATGSGPDLSKGA
MFERFTDRARRVVVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESLGISLEAVRQQVEEIIGQGQQAPSGHIPF
TPRAKKVLELSLREALQLGHNYIGTEHILLGLIREGEGVAAQVLVKLGADLNRVRQQVIQLLSGYTGSGKESATAGGPAE
GTPSTSLVLDQFGRNLTQAARESKLDPVIGREKEIERVMQVLSRRTKNNPVLIGEPGVGKTAVVEGLAQAIVKGEVPETL
KDKHLYTLDLGALVAGSRYRGDFEERLKKVLKEIRTRGDIILFIDELHTLVGAGAAEGAIDAASILKPMLARGELQTIGA
TTLDEYRKHLEKDAALERRFQPIQVAEPSLPHTIEILKGLRDRYEAHHRVSITDSALVAAATLADRYISDRFLPDKAIDL
IDEAGSRMRIRRMTAPPDLREFDEKIANVRRDKESAIDSQDFEKAASLRDTEKQLLAGKAKREKEWKSGDMDVVAEVDEE
LIAEVLATATGIPVFKLTEEESSRLLRMEDELHRRVIGQKDAIKALSQAIRRTRAGLKDPKRPGGSFIFAGPSGVGKTEL
SKTLAEFLFGDEDALIALDMSEFSEKHTVSRLFGSPPGYVGYEEGGQLTEKVRRKPFSVVLFDEVEKAHPDIFNSLLQIL
EDGRLTDSQGRVVDFKNTVIIMTTNLGTRDISKGFNLGFAAQGDTKTNYDRMKAKVNEELKQHFRPEFLNRVDDTVVFHQ
LTEEDIIQIVDLMLAKVDERLKDRDMGIELSGDAKQLLAKRGYDPIMGARPLRRTIQREIEDMLSEKILFGELRPGHIVV
VGVEGEGEEAKFTFRGEEKSALPDLPPIEATGSGPDLSKGA
Nucleotide
Download Length: 2526 bp
>NTDB_id=659320 OG625_RS21705 WP_329383636.1 4684346..4686871(+) (clpC) [Streptomyces sp. NBC_01351]
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCTTGATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCTGTTCGCCAGCAGGTTGAGGAGATCATCGGACAGGGGCAGCAGGCCCCTTCCGGCCACATCCCCTTC
ACTCCGCGGGCGAAGAAGGTCCTGGAGCTTTCGCTCCGAGAGGCCCTCCAGCTCGGCCACAACTACATCGGCACCGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTGAAGCTGGGCGCCGATCTCAACCGAG
TCCGGCAGCAGGTCATCCAGCTGCTCTCCGGTTACACCGGGAGCGGCAAGGAGTCGGCCACGGCCGGCGGCCCGGCCGAG
GGCACGCCCTCGACCTCGCTGGTCCTGGACCAGTTCGGCCGCAATCTCACCCAGGCTGCTCGTGAATCCAAGCTCGACCC
GGTCATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGGACCAAGAACAACCCGGTCCTCATCG
GCGAGCCCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTGGCGCAGGCGATCGTCAAGGGCGAGGTCCCCGAGACCCTC
AAGGACAAGCACCTCTACACGCTTGACCTGGGTGCCCTGGTCGCCGGTTCCCGCTACCGCGGTGACTTCGAAGAGCGCCT
GAAGAAGGTGCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTCCACACCCTCGTGGGTGCGG
GCGCCGCCGAGGGCGCGATCGACGCCGCCAGCATCCTCAAGCCCATGCTGGCCCGTGGTGAGCTCCAGACCATCGGTGCC
ACGACGCTTGACGAGTACCGCAAGCACCTCGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCGATCCAGGTGGCGGA
GCCTTCCCTCCCCCACACGATCGAGATCCTCAAGGGGCTGCGCGACCGTTACGAGGCCCACCACCGCGTCTCCATCACGG
ACTCGGCTCTCGTGGCCGCGGCGACTCTGGCCGACCGGTACATCTCGGACCGCTTCCTCCCGGACAAGGCGATCGACCTG
ATCGACGAGGCCGGCTCCCGGATGCGCATCCGTCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGC
GAACGTGCGGCGCGACAAGGAGTCGGCGATCGACTCCCAGGACTTCGAGAAGGCGGCCTCTCTCCGTGATACGGAGAAGC
AGCTGCTGGCGGGGAAGGCCAAGCGCGAGAAGGAATGGAAGTCCGGCGACATGGACGTCGTCGCCGAGGTGGACGAGGAG
CTGATCGCCGAGGTCCTCGCCACGGCGACCGGCATTCCCGTCTTCAAGCTCACCGAGGAGGAGTCCTCGCGACTGCTCCG
CATGGAGGACGAGCTCCACCGTCGGGTCATCGGCCAGAAGGACGCCATCAAGGCGCTCTCCCAGGCGATTCGCCGTACCC
GTGCGGGTCTGAAGGACCCGAAGCGCCCGGGCGGCTCGTTCATCTTCGCCGGTCCGTCCGGTGTCGGTAAGACCGAGCTC
TCCAAGACGCTCGCCGAATTCCTCTTCGGCGACGAGGACGCGCTGATCGCCCTCGACATGTCGGAGTTCAGCGAGAAGCA
CACGGTTTCCCGTCTCTTCGGTTCGCCCCCCGGTTACGTGGGCTACGAAGAGGGCGGCCAGCTCACCGAGAAGGTGCGCC
GGAAGCCGTTCTCCGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGATATCTTCAATTCCCTTCTCCAGATCCTG
GAGGACGGTCGTCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTGGG
TACGCGGGACATCTCGAAGGGCTTCAACCTGGGCTTCGCGGCCCAGGGCGACACGAAGACCAACTACGACCGGATGAAGG
CGAAGGTCAACGAAGAGCTCAAGCAGCACTTCCGGCCCGAGTTCCTCAACCGTGTCGACGACACGGTCGTCTTCCACCAG
CTCACCGAGGAAGACATCATCCAGATCGTCGACCTGATGCTGGCGAAGGTCGACGAGCGCCTGAAGGACCGCGACATGGG
CATCGAGCTGAGCGGTGACGCGAAGCAGCTCCTGGCCAAGCGCGGTTACGACCCGATCATGGGTGCCCGGCCGCTGCGCC
GGACCATCCAGCGCGAGATCGAGGACATGCTGTCGGAGAAGATCCTCTTCGGCGAGCTGCGTCCCGGTCACATCGTGGTG
GTCGGTGTGGAGGGTGAGGGCGAGGAAGCCAAGTTCACCTTCCGCGGCGAGGAGAAGTCGGCTCTGCCGGACCTCCCCCC
GATCGAGGCCACGGGCTCCGGCCCGGACCTGTCGAAGGGCGCGTAA
ATGTTCGAGAGGTTCACCGACCGCGCGCGGCGGGTTGTCGTCCTGGCTCAGGAAGAAGCCCGGATGCTCAACCACAACTA
CATCGGCACCGAGCACATCCTCCTGGGCTTGATCCACGAGGGTGAGGGTGTCGCCGCTAAGGCCCTGGAGAGCCTCGGGA
TTTCGCTCGAGGCTGTTCGCCAGCAGGTTGAGGAGATCATCGGACAGGGGCAGCAGGCCCCTTCCGGCCACATCCCCTTC
ACTCCGCGGGCGAAGAAGGTCCTGGAGCTTTCGCTCCGAGAGGCCCTCCAGCTCGGCCACAACTACATCGGCACCGAGCA
CATCCTGCTCGGCCTGATCCGCGAGGGCGAGGGCGTCGCCGCCCAGGTCCTCGTGAAGCTGGGCGCCGATCTCAACCGAG
TCCGGCAGCAGGTCATCCAGCTGCTCTCCGGTTACACCGGGAGCGGCAAGGAGTCGGCCACGGCCGGCGGCCCGGCCGAG
GGCACGCCCTCGACCTCGCTGGTCCTGGACCAGTTCGGCCGCAATCTCACCCAGGCTGCTCGTGAATCCAAGCTCGACCC
GGTCATCGGGCGCGAGAAGGAGATCGAGCGGGTCATGCAGGTGCTGTCCCGCCGGACCAAGAACAACCCGGTCCTCATCG
GCGAGCCCGGCGTCGGCAAGACCGCCGTCGTCGAGGGCCTGGCGCAGGCGATCGTCAAGGGCGAGGTCCCCGAGACCCTC
AAGGACAAGCACCTCTACACGCTTGACCTGGGTGCCCTGGTCGCCGGTTCCCGCTACCGCGGTGACTTCGAAGAGCGCCT
GAAGAAGGTGCTCAAGGAGATCCGCACCCGCGGCGACATCATCCTGTTCATCGACGAGCTCCACACCCTCGTGGGTGCGG
GCGCCGCCGAGGGCGCGATCGACGCCGCCAGCATCCTCAAGCCCATGCTGGCCCGTGGTGAGCTCCAGACCATCGGTGCC
ACGACGCTTGACGAGTACCGCAAGCACCTCGAGAAGGACGCGGCCCTCGAGCGCCGCTTCCAGCCGATCCAGGTGGCGGA
GCCTTCCCTCCCCCACACGATCGAGATCCTCAAGGGGCTGCGCGACCGTTACGAGGCCCACCACCGCGTCTCCATCACGG
ACTCGGCTCTCGTGGCCGCGGCGACTCTGGCCGACCGGTACATCTCGGACCGCTTCCTCCCGGACAAGGCGATCGACCTG
ATCGACGAGGCCGGCTCCCGGATGCGCATCCGTCGGATGACCGCGCCGCCGGACCTCCGCGAGTTCGACGAGAAGATCGC
GAACGTGCGGCGCGACAAGGAGTCGGCGATCGACTCCCAGGACTTCGAGAAGGCGGCCTCTCTCCGTGATACGGAGAAGC
AGCTGCTGGCGGGGAAGGCCAAGCGCGAGAAGGAATGGAAGTCCGGCGACATGGACGTCGTCGCCGAGGTGGACGAGGAG
CTGATCGCCGAGGTCCTCGCCACGGCGACCGGCATTCCCGTCTTCAAGCTCACCGAGGAGGAGTCCTCGCGACTGCTCCG
CATGGAGGACGAGCTCCACCGTCGGGTCATCGGCCAGAAGGACGCCATCAAGGCGCTCTCCCAGGCGATTCGCCGTACCC
GTGCGGGTCTGAAGGACCCGAAGCGCCCGGGCGGCTCGTTCATCTTCGCCGGTCCGTCCGGTGTCGGTAAGACCGAGCTC
TCCAAGACGCTCGCCGAATTCCTCTTCGGCGACGAGGACGCGCTGATCGCCCTCGACATGTCGGAGTTCAGCGAGAAGCA
CACGGTTTCCCGTCTCTTCGGTTCGCCCCCCGGTTACGTGGGCTACGAAGAGGGCGGCCAGCTCACCGAGAAGGTGCGCC
GGAAGCCGTTCTCCGTCGTCCTCTTCGACGAGGTCGAGAAGGCCCACCCGGATATCTTCAATTCCCTTCTCCAGATCCTG
GAGGACGGTCGTCTGACCGACTCCCAGGGCCGGGTCGTGGACTTCAAGAACACGGTCATCATCATGACGACCAACCTGGG
TACGCGGGACATCTCGAAGGGCTTCAACCTGGGCTTCGCGGCCCAGGGCGACACGAAGACCAACTACGACCGGATGAAGG
CGAAGGTCAACGAAGAGCTCAAGCAGCACTTCCGGCCCGAGTTCCTCAACCGTGTCGACGACACGGTCGTCTTCCACCAG
CTCACCGAGGAAGACATCATCCAGATCGTCGACCTGATGCTGGCGAAGGTCGACGAGCGCCTGAAGGACCGCGACATGGG
CATCGAGCTGAGCGGTGACGCGAAGCAGCTCCTGGCCAAGCGCGGTTACGACCCGATCATGGGTGCCCGGCCGCTGCGCC
GGACCATCCAGCGCGAGATCGAGGACATGCTGTCGGAGAAGATCCTCTTCGGCGAGCTGCGTCCCGGTCACATCGTGGTG
GTCGGTGTGGAGGGTGAGGGCGAGGAAGCCAAGTTCACCTTCCGCGGCGAGGAGAAGTCGGCTCTGCCGGACCTCCCCCC
GATCGAGGCCACGGGCTCCGGCCCGGACCTGTCGAAGGGCGCGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
62.112 |
95.719 |
0.595 |
| clpC | Streptococcus thermophilus LMD-9 |
44.233 |
100 |
0.442 |
| clpC | Streptococcus thermophilus LMG 18311 |
44.062 |
100 |
0.441 |
| clpC | Streptococcus mutans UA159 |
44.699 |
98.692 |
0.441 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
43.99 |
95.957 |
0.422 |
| clpC | Streptococcus pneumoniae Rx1 |
43.58 |
96.314 |
0.42 |
| clpC | Streptococcus pneumoniae D39 |
43.58 |
96.314 |
0.42 |
| clpC | Streptococcus pneumoniae TIGR4 |
43.333 |
96.314 |
0.417 |
| clpE | Streptococcus mutans UA159 |
53.662 |
74.673 |
0.401 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.201 |
75.624 |
0.395 |
| clpE | Streptococcus pneumoniae R6 |
52.044 |
75.624 |
0.394 |
| clpE | Streptococcus pneumoniae Rx1 |
52.044 |
75.624 |
0.394 |
| clpE | Streptococcus pneumoniae D39 |
52.044 |
75.624 |
0.394 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
52.581 |
73.722 |
0.388 |