Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OG625_RS10985 Genome accession   NZ_CP108356
Coordinates   2484084..2485307 (-) Length   407 a.a.
NCBI ID   WP_329378816.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01351     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2479084..2490307
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG625_RS10965 (OG625_11000) - 2479362..2479700 (-) 339 WP_329378808.1 P-II family nitrogen regulator -
  OG625_RS10970 (OG625_11005) - 2479697..2481043 (-) 1347 WP_329378810.1 ammonium transporter -
  OG625_RS10975 (OG625_11010) - 2481402..2482892 (-) 1491 WP_329378812.1 hypothetical protein -
  OG625_RS10980 (OG625_11015) - 2483337..2484005 (+) 669 WP_329378814.1 bifunctional DNA primase/polymerase -
  OG625_RS10985 (OG625_11020) pilA 2484084..2485307 (-) 1224 WP_329378816.1 signal recognition particle-docking protein FtsY Machinery gene
  OG625_RS10990 (OG625_11025) - 2485655..2486641 (+) 987 WP_329378818.1 LLM class flavin-dependent oxidoreductase -
  OG625_RS10995 (OG625_11030) - 2486683..2488113 (-) 1431 WP_329378820.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 407 a.a.        Molecular weight: 42748.99 Da        Isoelectric Point: 4.4583

>NTDB_id=659296 OG625_RS10985 WP_329378816.1 2484084..2485307(-) (pilA) [Streptomyces sp. NBC_01351]
MEILILALVIALVAVGAISGLVVSSRKKKQLPPPAPSSTPTITAPPAEPQVGEDAVETAEEPRRTIEEVVLPEAQAPVEA
PAEVPVAEPQAPAAPAVEVPEPTAGRLVRLRARLARSQNSLGKGLLTLLSREHLDEDTWEEIEETLLIADVGVVPTQELV
DRLRERVKVLGTRTPADLRALLKEELLTLLRTDFDRAVKTESGEDTPGVIMVVGVNGTGKTTTTGKLARVLVADGRSVVL
GAADTFRAAAADQLQTWGDRVGARTVRGPEGGDPASIAYDAVKEGIAEGADVVLIDTAGRLHTKTGLMDELGKVKRVVEK
HGPLDEILLVLDATTGQNGLTQARVFAEVVDITGIVLTKLDGTAKGGIVIAVQRELGVPVKLVGLGEGADDLAPFEPEAF
VDALIGD

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=659296 OG625_RS10985 WP_329378816.1 2484084..2485307(-) (pilA) [Streptomyces sp. NBC_01351]
ATGGAAATCCTCATTCTCGCCCTAGTCATCGCCCTGGTCGCGGTCGGCGCGATCAGCGGGCTCGTGGTCAGCAGCCGCAA
GAAGAAGCAGCTGCCGCCGCCGGCACCGTCGAGCACGCCGACCATCACTGCCCCTCCCGCGGAACCGCAGGTGGGGGAGG
ACGCCGTAGAGACGGCGGAAGAGCCGCGTCGCACCATCGAGGAGGTCGTCCTCCCCGAGGCGCAGGCGCCCGTAGAGGCC
CCCGCGGAGGTGCCGGTCGCGGAGCCGCAGGCCCCGGCCGCGCCCGCGGTCGAGGTGCCCGAGCCCACCGCCGGCCGCCT
GGTCCGGCTGCGCGCCCGACTCGCCCGGTCCCAGAACTCCCTCGGCAAGGGGCTGCTCACGCTGCTCTCCCGGGAGCACC
TCGACGAGGACACCTGGGAGGAGATCGAGGAGACCCTGCTCATCGCCGACGTGGGTGTCGTACCGACCCAGGAGCTCGTC
GACCGGCTCCGCGAGCGGGTCAAGGTGCTCGGCACCCGTACCCCGGCGGACCTGCGCGCCCTGCTCAAGGAAGAGCTGCT
GACCCTGCTGCGCACCGACTTCGACCGCGCCGTGAAGACGGAGAGCGGCGAGGACACCCCCGGCGTGATCATGGTCGTCG
GGGTCAACGGCACCGGCAAGACCACCACCACCGGCAAGCTCGCCCGGGTGCTCGTCGCCGACGGCCGCAGCGTGGTGCTC
GGCGCGGCCGACACCTTCCGCGCGGCCGCCGCCGACCAGCTCCAGACCTGGGGCGACCGCGTTGGCGCCCGTACCGTGCG
CGGCCCCGAGGGCGGCGACCCGGCCTCGATCGCCTACGACGCGGTCAAGGAGGGCATCGCCGAGGGCGCCGACGTGGTGC
TCATCGACACCGCCGGCCGCCTGCACACCAAGACCGGCCTCATGGACGAGCTCGGCAAGGTCAAGCGCGTCGTGGAGAAG
CACGGCCCGCTGGACGAGATCCTGCTGGTCCTCGACGCCACCACCGGCCAGAACGGCCTGACCCAGGCCCGGGTCTTCGC
CGAGGTCGTGGACATCACCGGCATCGTGCTGACCAAGCTCGACGGCACCGCCAAGGGCGGCATCGTCATCGCCGTCCAGC
GCGAGCTGGGAGTCCCCGTCAAGCTCGTCGGCCTCGGTGAGGGTGCGGACGACCTGGCCCCGTTCGAGCCGGAGGCGTTC
GTGGACGCCCTGATCGGCGACTGA

Domains

Predicted by InterProScan.

SRP54-type protein, helical bundle domain (SRP54_N)

(121-186)

SRP54-type protein, GTPase domain (SRP54)

(208-405)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Neisseria gonorrhoeae MS11

40.58

100

0.413