Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   MKF35_RS26115 Genome accession   NZ_CP092629
Coordinates   5637163..5637798 (-) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain HU20     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5632163..5642798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKF35_RS26085 murB 5633261..5634280 (-) 1020 WP_003106928.1 UDP-N-acetylmuramate dehydrogenase -
  MKF35_RS26090 - 5634277..5634741 (-) 465 WP_003106924.1 low molecular weight protein-tyrosine-phosphatase -
  MKF35_RS26095 kdsB 5634741..5635505 (-) 765 WP_003106922.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  MKF35_RS26100 - 5635505..5635690 (-) 186 WP_003091157.1 Trm112 family protein -
  MKF35_RS26105 lpxK 5635728..5636726 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  MKF35_RS26110 - 5636726..5637166 (-) 441 WP_003091161.1 biopolymer transporter ExbD -
  MKF35_RS26115 exbB 5637163..5637798 (-) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  MKF35_RS26120 comA 5637871..5640096 (-) 2226 WP_003113988.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  MKF35_RS26125 - 5640227..5640760 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  MKF35_RS26130 - 5640848..5642092 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=659293 MKF35_RS26115 WP_003091163.1 5637163..5637798(-) (exbB) [Pseudomonas aeruginosa strain HU20]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=659293 MKF35_RS26115 WP_003091163.1 5637163..5637798(-) (exbB) [Pseudomonas aeruginosa strain HU20]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGACGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81