Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG625_RS10100 Genome accession   NZ_CP108356
Coordinates   2270906..2271700 (+) Length   264 a.a.
NCBI ID   WP_329378508.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01351     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2265906..2276700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG625_RS10090 (OG625_10120) - 2266889..2269780 (-) 2892 WP_329378504.1 vitamin B12-dependent ribonucleotide reductase -
  OG625_RS10095 (OG625_10125) nrdR 2269926..2270438 (-) 513 WP_329378506.1 transcriptional regulator NrdR -
  OG625_RS10100 (OG625_10130) dinR/lexA 2270906..2271700 (+) 795 WP_329378508.1 transcriptional repressor LexA Regulator
  OG625_RS10105 (OG625_10135) - 2271792..2273762 (-) 1971 WP_329378510.1 ATP-dependent DNA helicase -
  OG625_RS10110 (OG625_10140) - 2273815..2275737 (-) 1923 WP_329378513.1 IucA/IucC family siderophore biosynthesis protein -
  OG625_RS10115 (OG625_10145) - 2275835..2276533 (-) 699 WP_329378515.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 28614.41 Da        Isoelectric Point: 7.4240

>NTDB_id=659291 OG625_RS10100 WP_329378508.1 2270906..2271700(+) (dinR/lexA) [Streptomyces sp. NBC_01351]
MTTTADSATITAQNRSQSRLEPVHAMNDANPNPEAEPVVRPARSLPGRPPGIRADSSGLTDRQRRVIEVIRDSVQRRGYP
PSMREIGQAVGLSSTSSVAHQLMALERKGFLRRDPHRPRAYEVRGSDQPSSQPTDTTGKPAASYVPLVGRIAAGGPILAE
ESVEDVFPLPRQLVGDGELFVLKVVGDSMIEAAICDGDWVTVRRQPVAENGDIVAAMLDGEATVKRFKREDGHVWLLPHN
AAYQPIPGDEATILGKVVAVLRRV

Nucleotide


Download         Length: 795 bp        

>NTDB_id=659291 OG625_RS10100 WP_329378508.1 2270906..2271700(+) (dinR/lexA) [Streptomyces sp. NBC_01351]
GTGACCACGACCGCAGACAGTGCCACCATCACTGCCCAGAACCGCTCCCAGAGCCGACTCGAGCCGGTGCATGCCATGAA
CGACGCAAACCCGAACCCGGAGGCGGAGCCCGTCGTACGCCCCGCGCGCTCGCTGCCAGGTCGACCTCCGGGCATCCGCG
CCGACAGCTCCGGACTCACGGACCGGCAGCGGAGGGTCATCGAGGTCATTCGCGACTCCGTGCAGCGCAGGGGCTACCCG
CCGTCCATGCGGGAGATCGGCCAGGCCGTCGGCCTGTCGAGCACGTCGTCCGTCGCCCACCAGCTGATGGCTCTGGAGCG
CAAGGGCTTCCTGCGGCGCGACCCTCACCGCCCCCGGGCGTACGAGGTGCGCGGTTCCGACCAGCCCAGCTCGCAGCCCA
CGGACACCACGGGCAAGCCCGCCGCGTCCTACGTTCCCCTGGTCGGCCGGATCGCGGCCGGCGGCCCGATCCTCGCCGAG
GAGTCCGTCGAGGACGTGTTCCCGCTCCCCCGCCAGCTGGTGGGGGACGGCGAGCTCTTCGTCCTCAAGGTCGTCGGCGA
CTCGATGATCGAGGCCGCCATCTGTGACGGGGACTGGGTCACGGTCCGCCGCCAGCCGGTCGCGGAGAACGGGGACATCG
TCGCCGCGATGCTCGACGGCGAAGCCACCGTCAAGCGGTTCAAGCGCGAGGACGGCCATGTCTGGCTCCTCCCGCACAAC
GCCGCCTACCAGCCGATTCCCGGCGACGAGGCGACCATCCTCGGCAAGGTCGTGGCCGTACTGCGTCGGGTCTGA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(146-258)

LexA DNA binding domain (LexA_DNA_bind)

(57-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

46.698

80.303

0.375