Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG252_RS34080 Genome accession   NZ_CP108354
Coordinates   7343494..7345227 (-) Length   577 a.a.
NCBI ID   WP_329340956.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01352     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7338494..7350227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG252_RS34070 (OG252_34075) - 7340101..7341390 (+) 1290 WP_329340952.1 RNA polymerase sigma factor -
  OG252_RS34075 (OG252_34080) rcrQ 7341566..7343494 (-) 1929 WP_329340954.1 ABC transporter ATP-binding protein Regulator
  OG252_RS34080 (OG252_34085) rcrP 7343494..7345227 (-) 1734 WP_329340956.1 ABC transporter ATP-binding protein Regulator
  OG252_RS34085 (OG252_34090) - 7345417..7346871 (-) 1455 WP_266439866.1 FGGY family carbohydrate kinase -
  OG252_RS34090 (OG252_34095) - 7346989..7347294 (-) 306 WP_266439867.1 YtxH domain-containing protein -
  OG252_RS34110 (OG252_34115) - 7348665..7348904 (-) 240 WP_329340961.1 DUF2568 domain-containing protein -
  OG252_RS34115 (OG252_34120) - 7348910..7349365 (+) 456 WP_329340963.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62579.76 Da        Isoelectric Point: 4.9583

>NTDB_id=659238 OG252_RS34080 WP_329340956.1 7343494..7345227(-) (rcrP) [Streptomyces sp. NBC_01352]
MLIRLLRTYIRPYKKPITLLVLLQFLQTCATLYLPTLNADIIDSGVVQGDTGYILSFGAVMIGISLVQVVCNVGAVYYGA
KTASAIGRDLRADIFDQVQSFSAREVGQFGAPSLITRTTNDVQQIQMLALMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVMGICLTLIVRALRPLFRSMQVKLDTVNRVLREQITGNRVIRAFVRDEYEQQRFRKANADLTDTALASGNLLAL
MFPMVMTVVNLSSIAVVWFGAHRIDGGEMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIEEVLGTSSSVVP
PKAPVLELRRHGHLELRGAGFRYPGAEEPVLKSIDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATDGEVLVDGVDVA
TIDPVLLAKTVSMVPQRPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKDFVERLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALAQETAEATVVIVAQRVSTIRDADRIVVLDEGRVVGTGRHQELMADN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=659238 OG252_RS34080 WP_329340956.1 7343494..7345227(-) (rcrP) [Streptomyces sp. NBC_01352]
GTGCTCATACGACTTCTGCGGACCTATATCAGGCCCTACAAGAAACCCATCACCCTGCTGGTGCTGCTGCAGTTCCTGCA
GACCTGCGCCACTCTCTACCTGCCCACGCTGAACGCGGACATCATCGACAGCGGCGTCGTGCAGGGCGACACCGGCTACA
TCCTCTCGTTCGGCGCCGTGATGATCGGTATCTCGCTGGTGCAGGTCGTGTGCAACGTCGGTGCCGTGTACTACGGCGCG
AAGACCGCCTCGGCGATCGGCCGCGACCTGCGGGCCGACATCTTCGACCAGGTGCAGTCCTTCTCGGCGCGCGAGGTCGG
CCAGTTCGGCGCGCCCTCGCTGATCACGCGGACGACCAATGACGTCCAGCAGATCCAGATGCTGGCCCTGATGACGTTCA
CGCTGATGGTGTCCGCGCCGATCATGTGCGTGGGCGGCATCGTGCTGGCGCTCGGACTGGACGTGCCGCTGTCCGGAGTG
CTCGTCGCGGTGGTGCCGGTGATGGGTATCTGCCTGACGCTCATCGTGCGCGCTCTGCGGCCGCTGTTCCGGTCCATGCA
GGTGAAGCTGGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGCGCCTTCGTGCGGGACG
AGTACGAGCAGCAACGCTTCCGCAAGGCCAACGCCGATCTGACCGACACCGCGCTGGCCTCCGGCAACCTGCTCGCGCTG
ATGTTCCCGATGGTCATGACGGTGGTCAACCTGTCGTCGATCGCGGTGGTGTGGTTCGGCGCGCATCGCATCGACGGCGG
GGAGATGCAGATCGGCGACCTGACCGCGTTCCTGGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACGTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTCTGCGCCGAGCGCATCGAGGAGGTCCTCGGCACCTCGTCGAGTGTGGTGCCG
CCGAAGGCACCGGTGCTGGAGCTGCGCCGGCACGGGCATCTGGAGCTCCGCGGGGCGGGCTTCCGCTATCCGGGGGCCGA
GGAGCCGGTGCTGAAGTCGATCGACCTGGTGGCCCGGCCGGGCGAGACGACCGCCGTGATCGGGTCGACCGGCAGCGGCA
AGTCGACGCTGCTGGGGCTGGTGCCGCGGCTGTTCGACGCGACCGACGGCGAGGTGCTCGTCGACGGCGTGGACGTGGCG
ACCATCGACCCGGTGCTGCTGGCGAAGACCGTCAGCATGGTGCCGCAGCGGCCCTACCTGTTCGCGGGCACGGTCGCCAC
CAACCTGCGCTACGGCAATCCGGACGCGACCGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGACTTCG
TCGAGCGGCTGGAGGGCGGGCTCGACGCGCCGATCGCACAGGGCGGGACGAACGTGTCGGGCGGGCAGCGGCAGCGGCTC
GCCATCGCCCGCACCCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCCTTCTCCGCCCTCGACTACGCGACCGA
CGCGGCCCTGCGTGCGGCACTGGCCCAGGAGACCGCCGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGGATCGTCGTCCTCGACGAGGGCCGGGTCGTCGGGACCGGACGGCACCAGGAGCTGATGGCGGACAAC
GAGACCTATCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCTGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(351-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.998

97.227

0.399