Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG252_RS34075 Genome accession   NZ_CP108354
Coordinates   7341566..7343494 (-) Length   642 a.a.
NCBI ID   WP_329340954.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01352     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 7336566..7348494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG252_RS34060 (OG252_34065) - 7336780..7338045 (+) 1266 WP_266439856.1 FAD-dependent oxidoreductase -
  OG252_RS34065 (OG252_34070) dnaG 7338093..7339994 (+) 1902 WP_329340950.1 DNA primase -
  OG252_RS34070 (OG252_34075) - 7340101..7341390 (+) 1290 WP_329340952.1 RNA polymerase sigma factor -
  OG252_RS34075 (OG252_34080) rcrQ 7341566..7343494 (-) 1929 WP_329340954.1 ABC transporter ATP-binding protein Regulator
  OG252_RS34080 (OG252_34085) rcrP 7343494..7345227 (-) 1734 WP_329340956.1 ABC transporter ATP-binding protein Regulator
  OG252_RS34085 (OG252_34090) - 7345417..7346871 (-) 1455 WP_266439866.1 FGGY family carbohydrate kinase -
  OG252_RS34090 (OG252_34095) - 7346989..7347294 (-) 306 WP_266439867.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69611.14 Da        Isoelectric Point: 6.0077

>NTDB_id=659237 OG252_RS34075 WP_329340954.1 7341566..7343494(-) (rcrQ) [Streptomyces sp. NBC_01352]
MAGPAGRMMAGTGPDHHSMDFKGSGKRLMAQFKPERLTIYALLICVTVSVALSVVGPKILGRATDLVFAGIIGRQMPAGS
SKQEVLDSMRERGEGSVADMLRSTDFTPGKGIDFDAVGQVLLLALAVFLVAGVLMLAATRLVNRAVNRTMYRMREDVQSK
LSRLPLAYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSLLTIIGVLVMMFWVSWLLALVALVTVPLSYVVATRVGK
RSQPHFVQQWRTTGKLNAHVEEMYTGHALVKVFGRQEESAQQFAEQNEALYEAGFKAQFNSGIMQPLMMFVSNLTYVLVA
VIGGLRVAAGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFEILDAEEQGADPMPGAKPEELRGRVALE
HVSFRYDPDKPLIEDLSLKVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVSGGRITLDGVDIAQMSRDELRSGIGMVLQDT
WLFGGTIAENIAYGASREVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHADLLAADGAYARLYKAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=659237 OG252_RS34075 WP_329340954.1 7341566..7343494(-) (rcrQ) [Streptomyces sp. NBC_01352]
ATGGCGGGGCCTGCAGGGCGGATGATGGCCGGGACCGGCCCCGACCACCATTCGATGGACTTCAAGGGGTCGGGCAAACG
CCTCATGGCCCAGTTCAAGCCCGAGCGGCTGACCATCTACGCGCTGCTGATCTGCGTGACGGTGAGCGTCGCTCTGTCGG
TCGTCGGGCCGAAGATCCTCGGCAGGGCCACCGACCTGGTCTTCGCGGGAATCATCGGCCGGCAGATGCCCGCCGGGTCG
AGCAAGCAGGAAGTCCTCGACTCGATGCGCGAGCGGGGCGAGGGCTCCGTCGCCGACATGCTCCGCAGCACCGACTTCAC
CCCGGGCAAGGGCATCGACTTCGATGCCGTCGGCCAGGTGCTGCTGCTCGCGCTCGCCGTGTTCCTGGTGGCCGGTGTGC
TGATGCTGGCGGCCACCCGGCTGGTGAACCGGGCGGTCAACCGGACGATGTACCGGATGCGCGAGGACGTGCAGAGCAAG
CTGTCGCGGCTGCCGCTGGCGTACTTCGACAAGCGGCAGCGCGGTGAGGTGCTGTCCCGGGCCACCAACGACATCGACAA
CATCGGGCAGACCCTGCAGCAGTCGATGGGCCAGCTCATCAACTCCCTGCTCACCATCATCGGTGTGCTCGTGATGATGT
TCTGGGTGTCCTGGCTGCTGGCGCTGGTCGCGCTCGTCACCGTGCCGCTGTCGTACGTCGTCGCCACCCGCGTCGGCAAG
CGGTCGCAGCCGCACTTCGTGCAGCAGTGGCGCACCACCGGCAAGCTCAACGCGCACGTCGAGGAGATGTACACCGGGCA
CGCCCTGGTGAAGGTGTTCGGCCGTCAGGAGGAGTCGGCGCAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCCG
GGTTCAAGGCGCAGTTCAACAGCGGGATCATGCAGCCGCTGATGATGTTCGTGTCGAACCTGACGTACGTCCTGGTCGCG
GTCATCGGCGGGCTGCGGGTGGCGGCCGGTGCGCTGTCCATCGGCGATGTGCAGGCCTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCGGGGGTCGCCTCGGCGGAGCGGGTCTTCGAGA
TCCTGGACGCGGAGGAGCAGGGCGCGGACCCGATGCCGGGCGCGAAGCCCGAGGAGCTGCGCGGGCGGGTGGCGCTGGAG
CACGTGTCGTTCCGGTACGACCCCGACAAGCCGCTCATCGAGGATCTGTCGCTGAAGGTCGAGCCGGGTCACACGGTCGC
GATCGTCGGACCGACGGGAGCCGGCAAGACGACCCTGGTGAACCTGCTCATGCGGTTCTACGAGGTGTCCGGCGGCCGGA
TCACCCTCGACGGCGTCGACATCGCGCAGATGTCCCGGGACGAACTGCGCTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACGATCGCCGAGAACATCGCGTACGGCGCCTCCCGCGAGGTCACGCGCGGGGAGATCGAGGAGGC
GGCGCGCGCGGCCCACGCGGACCGGTTCGTGCGGACGCTGCCCGACGGCTACGACACCGTGATCGACGACGAGGGCAGCG
GGGTCAGCGCCGGTGAGAAGCAGCTGATCACCATCGCGCGGGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTCGACGAG
GCGACGAGTTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCCAAGCTCGCGCACGGGCGTACGTCGTT
CGTCATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATTCTGGTGATGGAGAACGGGTCGATCGTGGAGCAGG
GCGCGCACGCGGATCTGCTGGCGGCCGACGGGGCGTACGCGCGGCTGTACAAGGCGCAGTTCGCGCAAGCGGTGGCTGAG
GTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(42-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.195

96.417

0.397