Detailed information NTG0659187

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: MKS89_RS12435
• Genome accession: NZ_CP092587
• Coordinates: 2796963..2797949 (-)
• Length: 328 a.a.
• NCBI ID: WP_072955848.1
• Uniprot ID: A0A1M4WHS6
• Organism: Vibrio gazogenes strain PB1
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2791963..2802949

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MKS89_RS12420 (MKS89_12435)	-	2792071..2794128 (+)	2058	WP_072955855.1	ATP-binding protein	-
MKS89_RS12425 (MKS89_12440)	hpxO	2794197..2795351 (-)	1155	WP_072955853.1	FAD-dependent urate hydroxylase HpxO	-
MKS89_RS12430 (MKS89_12445)	-	2795821..2796867 (+)	1047	WP_072955850.1	pectate lyase	-
MKS89_RS12435 (MKS89_12450)	rpoS	2796963..2797949 (-)	987	WP_072955848.1	RNA polymerase sigma factor RpoS	Regulator
MKS89_RS12440 (MKS89_12455)	-	2798031..2798939 (-)	909	WP_072955845.1	peptidoglycan DD-metalloendopeptidase family protein	-
MKS89_RS12445 (MKS89_12460)	-	2798942..2799568 (-)	627	WP_072955843.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
MKS89_RS12450 (MKS89_12465)	surE	2799574..2800314 (-)	741	WP_072955840.1	5'/3'-nucleotidase SurE	-
MKS89_RS12455 (MKS89_12470)	truD	2800318..2801364 (-)	1047	WP_072955837.1	tRNA pseudouridine(13) synthase TruD	-
MKS89_RS12460 (MKS89_12475)	ispF	2801445..2801918 (-)	474	WP_072955834.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
MKS89_RS12465 (MKS89_12480)	ispD	2801952..2802644 (-)	693	WP_072955832.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
MKS89_RS12470 (MKS89_12485)	ftsB	2802645..2802926 (-)	282	WP_072955829.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37684.48 Da
• Isoelectric Point: 4.6075

>NTDB_id=659187 MKS89_RS12435 WP_072955848.1 2796963..2797949(-) (rpoS) [Vibrio gazogenes strain PB1]
MSKSNSVTKVDQFDFDSGAFDLNTLDNEVSSDATSVETREDYEVTSKSLDATQLYLGEIGFSPLLTAEEEILYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEDIAFELDKSVDDVSKMLRLNERISSVDTPIGGDGDKALLDIIPDAKHYDP
EYSTEDDDIKSSLLHWLDELNPKQKEVLARRFGLLGYEPSTLEEVGKEINLTRERVRQIQVEGLRRLREILLKQGLNMES
LFDVESEE

Nucleotide

• Length: 987 bp

>NTDB_id=659187 MKS89_RS12435 WP_072955848.1 2796963..2797949(-) (rpoS) [Vibrio gazogenes strain PB1]
ATGAGTAAAAGCAATTCAGTAACTAAGGTCGATCAATTTGATTTTGATTCAGGAGCGTTTGATCTCAATACATTGGACAA
CGAGGTCAGTTCTGACGCTACATCCGTTGAAACTCGAGAAGATTATGAAGTAACTTCCAAGAGCTTAGACGCAACTCAAC
TCTATTTAGGCGAAATCGGTTTTTCACCTTTGTTAACCGCAGAGGAAGAAATCCTGTACGCTCGTCGGGCTCTTCGGGGA
GATGAGGCCGCTCGTAAGCGAATGATTGAGAGTAATCTACGTCTCGTTGTTAAAATATCGCGCCGATATAGTAACCGTGG
TCTGGCTTTGCTGGATCTAATCGAAGAAGGTAACCTCGGGTTGATTCGGGCCGTTGAAAAGTTTGATCCAGAAAGAGGAT
TTCGTTTTTCTACGTATGCAACCTGGTGGATCAGACAAACGATTGAACGGGCGTTGATGAATCAAACCAGAACGATTCGT
TTACCTATCCACGTTGTCAAAGAACTCAATATTTATTTGCGGACAGCACGTGAGCTATCACAGAAGTTAGACCATGAACC
AACAGCGGAAGACATTGCGTTTGAGCTGGATAAATCGGTTGATGATGTCAGTAAGATGCTTCGTCTGAACGAACGTATTA
GTTCTGTTGATACACCTATTGGTGGTGATGGTGATAAAGCATTGTTGGATATCATTCCTGATGCCAAACACTATGACCCA
GAATATTCGACAGAAGATGATGATATCAAATCTTCACTCTTACATTGGTTAGATGAACTAAATCCGAAACAGAAAGAAGT
GTTGGCAAGACGCTTTGGTTTACTCGGGTATGAACCATCCACTTTAGAAGAAGTTGGGAAAGAGATTAATCTAACCCGTG
AGCGAGTTCGCCAAATCCAAGTCGAAGGCCTGCGTCGTTTAAGAGAAATTCTACTGAAACAAGGCTTGAATATGGAATCT
TTGTTCGATGTAGAGAGTGAAGAATAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-242)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

3D structure

• AlphaFold DB: A0A1M4WHS6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	82.53	100	0.835