Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   MKS89_RS12235 Genome accession   NZ_CP092587
Coordinates   2751180..2751698 (-) Length   172 a.a.
NCBI ID   WP_072956449.1    Uniprot ID   A0A1M4WNM9
Organism   Vibrio gazogenes strain PB1     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2746180..2756698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS89_RS12210 (MKS89_12225) rimM 2746216..2746770 (-) 555 WP_072955936.1 ribosome maturation factor RimM -
  MKS89_RS12215 (MKS89_12230) rpsP 2746793..2747041 (-) 249 WP_059121562.1 30S ribosomal protein S16 -
  MKS89_RS12220 (MKS89_12235) ffh 2747219..2748586 (-) 1368 WP_072955934.1 signal recognition particle protein -
  MKS89_RS12225 (MKS89_12240) - 2748838..2749632 (+) 795 WP_072955932.1 inner membrane protein YpjD -
  MKS89_RS12230 (MKS89_12245) - 2749715..2750989 (+) 1275 WP_072955930.1 CNNM domain-containing protein -
  MKS89_RS12235 (MKS89_12250) luxS 2751180..2751698 (-) 519 WP_072956449.1 S-ribosylhomocysteine lyase Regulator
  MKS89_RS12240 (MKS89_12255) gshA 2751848..2753449 (-) 1602 WP_072955929.1 glutamate--cysteine ligase -
  MKS89_RS12245 (MKS89_12260) - 2753543..2756386 (-) 2844 WP_072955927.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18855.63 Da        Isoelectric Point: 4.6714

>NTDB_id=659184 MKS89_RS12235 WP_072956449.1 2751180..2751698(-) (luxS) [Vibrio gazogenes strain PB1]
MPLLDSFTVDHTRMNAPAVRVAKTMNTPKGDTITVFDLRFTVPNQDILSEKGIHTLEHLFAGFMRAHLNGNGVEIIDISP
MGCRTGFYMSLIGVPSEQRVADAWLAAMEDVLKVEDQNKIPELNIYQCGTAAMHSLDEAKDIAKAVISSGISVNQNDALA
LPESMLQELKVD

Nucleotide


Download         Length: 519 bp        

>NTDB_id=659184 MKS89_RS12235 WP_072956449.1 2751180..2751698(-) (luxS) [Vibrio gazogenes strain PB1]
ATGCCATTATTAGATAGTTTTACGGTGGATCATACACGTATGAATGCCCCTGCCGTTCGTGTTGCTAAAACAATGAATAC
CCCTAAAGGCGATACGATTACAGTGTTTGATTTACGCTTTACCGTGCCGAATCAAGATATCCTTTCCGAGAAAGGTATTC
ATACATTAGAACACTTATTTGCGGGCTTTATGAGAGCTCATCTCAATGGTAACGGCGTTGAAATTATTGATATTTCCCCA
ATGGGATGCCGGACAGGCTTCTACATGAGCTTAATTGGCGTGCCTTCTGAGCAGCGAGTCGCTGATGCTTGGTTAGCCGC
AATGGAAGATGTACTGAAGGTTGAAGACCAGAACAAGATTCCGGAATTAAATATTTATCAATGCGGAACTGCAGCGATGC
ACTCTCTGGATGAGGCGAAAGATATTGCTAAAGCTGTCATTTCAAGTGGTATCAGTGTGAATCAGAATGATGCTCTGGCG
CTACCAGAATCAATGCTTCAGGAACTGAAAGTGGACTGA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-154)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M4WNM9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

85.38

99.419

0.849