Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   MKS89_RS01085 Genome accession   NZ_CP092587
Coordinates   249398..250402 (+) Length   334 a.a.
NCBI ID   WP_072960550.1    Uniprot ID   A0A1M5D6A0
Organism   Vibrio gazogenes strain PB1     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 244398..255402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MKS89_RS01070 (MKS89_01070) - 244889..246166 (-) 1278 WP_072960543.1 malic enzyme-like NAD(P)-binding protein -
  MKS89_RS01075 (MKS89_01075) rpmE 246472..246693 (-) 222 WP_072960545.1 50S ribosomal protein L31 -
  MKS89_RS01080 (MKS89_01080) priA 246944..249148 (+) 2205 WP_072960601.1 primosomal protein N' -
  MKS89_RS01085 (MKS89_01085) cytR 249398..250402 (+) 1005 WP_072960550.1 DNA-binding transcriptional regulator CytR Regulator
  MKS89_RS01090 (MKS89_01090) ftsN 250520..251068 (+) 549 WP_072960553.1 cell division protein FtsN -
  MKS89_RS01095 (MKS89_01095) hslV 251211..251750 (+) 540 WP_038178732.1 ATP-dependent protease subunit HslV -
  MKS89_RS01100 (MKS89_01100) hslU 251795..253126 (+) 1332 WP_072960556.1 HslU--HslV peptidase ATPase subunit -
  MKS89_RS01105 (MKS89_01105) - 253310..254227 (+) 918 WP_072960558.1 1,4-dihydroxy-2-naphthoate polyprenyltransferase -
  MKS89_RS01110 (MKS89_01110) rraA 254303..254866 (+) 564 WP_072960604.1 ribonuclease E activity regulator RraA -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36706.32 Da        Isoelectric Point: 6.6914

>NTDB_id=659170 MKS89_RS01085 WP_072960550.1 249398..250402(+) (cytR) [Vibrio gazogenes strain PB1]
MATMKDVAQLAGVSTATVSRALMNPEKVSPTTRKRVEDAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFTEIIRG
IEDAAVEHGYLVLLGDSGQQKKRESSFVNLVFTKQADGMLLLGTDLPFDVSKSEQKNLPPMVMACEYAPELELPTVHIDN
LTSAFEVVNYLTQMGHKKIGEIAGPDSAALCHFRHQGYMQALRRAGITMNPAYHYKGDFSFEAGVKAIRLLLGLSEPPGA
VFCHNDMMAIGAIQEAKRLGVRVPQDLSVVGFDDINFAQYCDPPLTTVSQPRYEIGRQAMLMMLEVLRGHDVRAGSRLLE
TKLVIRESVAAPRG

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=659170 MKS89_RS01085 WP_072960550.1 249398..250402(+) (cytR) [Vibrio gazogenes strain PB1]
ATGGCGACAATGAAGGATGTTGCTCAACTAGCGGGAGTGTCAACCGCGACCGTATCTAGGGCGTTGATGAATCCCGAAAA
AGTGTCGCCTACGACAAGAAAACGGGTTGAAGATGCAGTTCTTGAAGCCGGATACTCTCCGAATTCACTGGCACGAAATT
TAAGACGTAACGAATCAAAGACGATTGTTGCGATCGTTCCTGATATCTGTGATCCATACTTCACTGAAATTATCCGAGGT
ATCGAGGATGCTGCTGTCGAGCACGGTTATTTAGTGTTACTTGGTGATAGCGGCCAACAGAAGAAACGTGAAAGTTCTTT
TGTGAATCTGGTCTTTACCAAGCAAGCCGACGGCATGCTACTGCTTGGTACCGATTTACCGTTTGATGTCAGTAAGTCAG
AACAGAAAAACTTACCACCGATGGTGATGGCCTGCGAGTACGCACCAGAGCTGGAATTGCCGACTGTCCATATTGATAAT
CTGACTTCTGCGTTTGAAGTGGTTAATTATCTCACTCAGATGGGGCATAAAAAGATTGGTGAAATTGCCGGCCCCGATTC
AGCGGCTTTGTGTCATTTCCGTCATCAGGGATATATGCAGGCTTTAAGACGTGCCGGCATTACGATGAATCCTGCTTATC
ATTACAAAGGTGATTTCAGCTTTGAAGCGGGTGTGAAAGCGATTCGGCTCCTTCTCGGATTGTCCGAGCCTCCGGGCGCT
GTTTTTTGCCACAATGACATGATGGCTATCGGTGCCATTCAAGAAGCGAAACGCTTAGGTGTCAGAGTGCCTCAGGATCT
GTCAGTGGTTGGTTTCGACGATATCAACTTTGCTCAGTATTGTGATCCACCGTTAACGACTGTCTCTCAGCCTCGGTATG
AGATTGGCCGTCAGGCGATGCTAATGATGTTAGAAGTGCTCCGGGGGCATGATGTTCGGGCGGGCTCTCGTTTGCTGGAA
ACAAAATTGGTGATTCGTGAAAGTGTGGCAGCTCCTCGCGGATGA

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1M5D6A0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio cholerae C6706

87.952

99.401

0.874
  cytR Vibrio parahaemolyticus RIMD 2210633

85.285

99.701

0.85