Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   OG252_RS04480 Genome accession   NZ_CP108354
Coordinates   913709..914734 (+) Length   341 a.a.
NCBI ID   WP_329333874.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01352     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 908709..919734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG252_RS04465 (OG252_04465) - 909056..910609 (+) 1554 WP_329333870.1 ABC transporter substrate-binding protein -
  OG252_RS04470 (OG252_04470) - 910625..911551 (+) 927 WP_266451776.1 ABC transporter permease -
  OG252_RS04475 (OG252_04475) - 911566..913716 (+) 2151 WP_329333872.1 dipeptide/oligopeptide/nickel ABC transporter permease/ATP-binding protein -
  OG252_RS04480 (OG252_04480) amiE 913709..914734 (+) 1026 WP_329333874.1 oligopeptide/dipeptide ABC transporter ATP-binding protein Regulator
  OG252_RS04485 (OG252_04485) - 914837..915475 (+) 639 WP_329333876.1 hypothetical protein -
  OG252_RS04490 (OG252_04490) - 915565..915978 (+) 414 Protein_897 hypothetical protein -
  OG252_RS04495 (OG252_04495) - 916089..917366 (+) 1278 WP_329333879.1 alginate lyase family protein -
  OG252_RS04500 (OG252_04500) - 917418..918644 (-) 1227 WP_329333881.1 glycoside hydrolase family 88 protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 36746.12 Da        Isoelectric Point: 7.0073

>NTDB_id=659170 OG252_RS04480 WP_329333874.1 913709..914734(+) (amiE) [Streptomyces sp. NBC_01352]
MPEPGTLLEAAGLVKSFAVPRTAKGSRRMRAVDGVDLSLGRGETLGLVGESGCGKSTLARILLMLERPDEGTVRFDGVDP
FTLSGARLLAWRRKVQMVFQDPFGSLNPRLCAADLIGEPWLTHRDLVPASRRAARVGELLEMVGLRAADARRYPQEFSGG
QRQRIGIARALALEPEVIVCDEPVSALDLSVQAQVLNLLGDLRDELGLSYLFISHDLSVVRHVADRVAVMYLGRIVESGP
AEEVFERPYHPYTAALLSAAPSLAGGGRAKRERIVLTGEIPSPADPPSGCRFRTRCWRAEDICAETVPSTVSPLATSSHT
AACHFPLEETAASNSGATMGR

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=659170 OG252_RS04480 WP_329333874.1 913709..914734(+) (amiE) [Streptomyces sp. NBC_01352]
ATGCCTGAGCCCGGGACGCTGCTGGAGGCCGCCGGCCTGGTCAAGAGCTTCGCGGTACCGCGCACCGCGAAGGGCAGTAG
GAGGATGCGCGCGGTCGACGGGGTGGATCTGAGCCTGGGCCGCGGCGAGACTCTCGGCCTGGTCGGCGAGTCCGGCTGCG
GGAAGTCCACGCTGGCCAGGATCCTGCTGATGCTGGAGCGCCCCGACGAAGGAACCGTTCGTTTCGACGGGGTCGATCCC
TTCACCTTGTCCGGCGCGCGCCTGCTCGCCTGGCGCCGCAAGGTCCAGATGGTCTTCCAGGACCCGTTCGGCTCGCTCAA
CCCCCGGCTGTGTGCGGCGGACCTGATCGGCGAGCCCTGGCTCACCCACCGGGACCTCGTGCCCGCTTCCCGACGGGCCG
CACGCGTGGGCGAGTTGCTGGAGATGGTCGGGCTGCGCGCGGCCGACGCCCGCCGTTACCCGCAGGAGTTCTCGGGTGGT
CAGCGGCAGCGGATCGGCATCGCCCGCGCGCTCGCCCTGGAGCCCGAGGTCATCGTCTGCGACGAGCCGGTCTCCGCGCT
GGACCTGTCGGTGCAGGCACAGGTTCTCAACCTGCTCGGCGACCTGCGGGACGAGTTGGGACTGTCGTACCTGTTCATCT
CGCACGACCTGTCCGTGGTGCGGCACGTGGCCGACCGCGTCGCCGTGATGTACCTGGGCAGGATCGTCGAGTCGGGCCCG
GCGGAGGAGGTCTTCGAGCGCCCGTACCACCCGTACACGGCCGCCCTCCTGTCGGCGGCACCCTCCTTGGCGGGCGGCGG
CAGGGCGAAGCGGGAGCGCATCGTCCTCACCGGCGAGATCCCCTCACCGGCCGACCCGCCGTCCGGATGCCGGTTCCGGA
CCCGGTGTTGGCGGGCGGAGGACATCTGCGCCGAAACCGTGCCCAGCACTGTGTCTCCGCTCGCAACGAGCTCTCACACG
GCGGCCTGCCACTTCCCACTGGAGGAGACCGCCGCGTCCAACAGCGGTGCCACTATGGGCCGATGA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(236-303)

ABC transporter (ABC_tran)

(33-184)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

40.323

90.909

0.367