Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   OG252_RS00830 Genome accession   NZ_CP108354
Coordinates   152928..153599 (-) Length   223 a.a.
NCBI ID   WP_329332888.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01352     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 147928..158599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG252_RS00795 (OG252_00800) - 148277..148798 (-) 522 WP_329332878.1 MSMEG_0572/Sll0783 family nitrogen starvation response protein -
  OG252_RS00800 (OG252_00805) - 148837..149652 (-) 816 WP_329332880.1 amidohydrolase family protein -
  OG252_RS00805 (OG252_00810) - 149668..150981 (-) 1314 WP_329332882.1 MSMEG_0569 family flavin-dependent oxidoreductase -
  OG252_RS00810 (OG252_00815) - 150978..151283 (-) 306 WP_266452767.1 MSMEG_0570 family nitrogen starvation response protein -
  OG252_RS00815 (OG252_00820) - 151567..151740 (-) 174 WP_329332884.1 helix-turn-helix domain-containing protein -
  OG252_RS00820 (OG252_00825) - 152011..152367 (+) 357 WP_266452765.1 hypothetical protein -
  OG252_RS00825 (OG252_00830) - 152567..152770 (+) 204 WP_329332886.1 hypothetical protein -
  OG252_RS00830 (OG252_00835) dinR/lexA 152928..153599 (-) 672 WP_329332888.1 transcriptional repressor LexA Regulator
  OG252_RS00835 (OG252_00840) - 154025..156871 (-) 2847 WP_329332890.1 AAA family ATPase -
  OG252_RS00840 (OG252_00845) - 157323..157748 (-) 426 WP_266452758.1 hypothetical protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24018.42 Da        Isoelectric Point: 5.1088

>NTDB_id=659166 OG252_RS00830 WP_329332888.1 152928..153599(-) (dinR/lexA) [Streptomyces sp. NBC_01352]
MDNSAPARRGRPPGSGTAEGQLTDRQSAIVRYITESVAGQGYPPSMREIGKAVGLVSTSSVAHQLMTLERKGVLYRDPHR
PRAYQVRPSWAPDLGARSEAPVEVPLVGRIAAGAPLLAEELVEDVYSLPRQVVGDGDLFALTVSGDSMIDASICDGDMVI
VRRMDSADHGDIVAALLEDEATVKVLRRQEGQVWLMPRNPAYEPIPGDQAQILGKVVGVLRML

Nucleotide


Download         Length: 672 bp        

>NTDB_id=659166 OG252_RS00830 WP_329332888.1 152928..153599(-) (dinR/lexA) [Streptomyces sp. NBC_01352]
ATGGACAACAGCGCGCCAGCACGTCGGGGCCGTCCCCCGGGCTCCGGTACCGCCGAGGGGCAGCTGACGGACCGCCAGTC
GGCCATCGTCCGCTACATCACGGAGTCGGTCGCGGGGCAGGGTTACCCGCCGTCGATGCGGGAGATCGGCAAGGCCGTGG
GCCTCGTCAGTACGTCCTCGGTCGCCCACCAGCTGATGACCCTCGAGCGCAAGGGCGTCCTCTACCGTGACCCGCACCGT
CCACGCGCCTACCAGGTACGGCCCTCCTGGGCACCCGACCTCGGCGCCAGGAGCGAAGCGCCGGTCGAGGTGCCGCTGGT
GGGACGGATCGCCGCCGGTGCACCCCTGCTCGCCGAGGAACTGGTCGAGGACGTCTACTCCCTGCCCCGCCAAGTCGTCG
GTGACGGCGACCTGTTCGCCCTGACGGTCTCCGGCGACAGCATGATCGACGCATCGATCTGTGACGGCGACATGGTCATC
GTCCGCCGCATGGACAGCGCCGACCACGGCGACATCGTCGCCGCGCTCCTGGAGGACGAAGCAACCGTCAAGGTGCTGCG
CCGGCAGGAGGGGCAGGTGTGGCTCATGCCCCGCAACCCCGCCTACGAGCCGATCCCCGGCGACCAGGCGCAGATCCTCG
GCAAGGTCGTCGGCGTACTCCGCATGCTCTAG

Domains

Predicted by InterProScan.

LexA DNA binding domain (LexA_DNA_bind)

(21-83)

Peptidase S24-like (Peptidase_S24)

(105-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

44.39

91.928

0.408