Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   OG566_RS27375 Genome accession   NZ_CP108352
Coordinates   5917340..5919073 (-) Length   577 a.a.
NCBI ID   WP_329120863.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01353     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5912340..5924073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG566_RS27365 (OG566_27410) rpoS 5914251..5915366 (+) 1116 WP_329125677.1 RNA polymerase sigma factor Regulator
  OG566_RS27370 (OG566_27415) rcrQ 5915373..5917340 (-) 1968 WP_329120861.1 ABC transporter ATP-binding protein Regulator
  OG566_RS27375 (OG566_27420) rcrP 5917340..5919073 (-) 1734 WP_329120863.1 ABC transporter ATP-binding protein Regulator
  OG566_RS27380 (OG566_27425) - 5919164..5920603 (-) 1440 WP_329120865.1 FGGY family carbohydrate kinase -
  OG566_RS27385 (OG566_27430) - 5920709..5921011 (-) 303 WP_329120867.1 YtxH domain-containing protein -
  OG566_RS27405 (OG566_27450) - 5922108..5922710 (+) 603 WP_329120869.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62818.12 Da        Isoelectric Point: 6.0410

>NTDB_id=659141 OG566_RS27375 WP_329120863.1 5917340..5919073(-) (rcrP) [Streptomyces sp. NBC_01353]
MLLRLLRTHLRPYKKPIGLLVLLQFLQTCASLYLPTLNADIIDNGVVNGDTAYILRFGALMIAVSVVQVVCNVGAVYYGA
RTASALGRDVRAAVFDRVQSFSAREVGQFGAPSLITRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGIVMALSLDVPLSAV
LIAVVPVLGIAVSLIVKKMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVKDDYERERFKGSNTELTDVSMETGRLMAL
MFPTVMTVVNISSVAVVWFGAHRIDSGGMEIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLATESSVVP
PAEPVAELKRRGHLEVRGADFRYPGAEESVLRAVELVARPGETTAIIGSTGSGKSTLLGLVPRLFDVTGGEVLVDGVDVR
KLDAGLMARTVGLVPQKPYLFSGTVATNLRYGKPDATDDELWHALEVAQAADFVKKLENGLNAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYQTDALLREALKEETADSTVVIVAQRVSTIRDADRIVVLDEGRVVGAGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=659141 OG566_RS27375 WP_329120863.1 5917340..5919073(-) (rcrP) [Streptomyces sp. NBC_01353]
GTGCTCCTACGACTTCTCCGAACCCACCTCCGACCGTACAAAAAGCCCATAGGCCTGCTGGTCCTGCTCCAGTTCCTGCA
GACCTGTGCCTCTCTCTATCTGCCGACCCTGAACGCGGACATCATCGACAACGGTGTCGTGAACGGGGACACCGCCTACA
TCCTGCGGTTCGGCGCCCTGATGATCGCGGTCTCCGTGGTCCAGGTCGTCTGCAACGTCGGGGCCGTGTACTACGGGGCG
CGGACCGCGTCGGCCCTCGGCCGGGACGTCCGTGCCGCCGTCTTCGATCGGGTGCAGTCGTTCTCCGCCCGTGAGGTCGG
CCAGTTCGGCGCGCCGTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGGTCCAGATGCTGGTCCTGATGGCGTTCA
CGCTCATGGTCTCGGCGCCGATCATGTGCGTCGGCGGCATCGTCATGGCGCTGAGTCTCGACGTGCCGCTGTCCGCGGTA
CTGATCGCGGTCGTGCCGGTCCTCGGCATCGCGGTCTCGCTGATCGTGAAGAAGATGCGGCCGCTGTTCCGGACCATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTGATCCGCGCGTTCGTGAAGGACG
ACTACGAGCGTGAGCGGTTCAAGGGTTCGAACACCGAGCTGACCGACGTGTCGATGGAGACCGGCCGGCTGATGGCGCTG
ATGTTCCCGACGGTCATGACGGTCGTGAACATCTCCAGCGTCGCGGTGGTCTGGTTCGGTGCGCACCGCATCGACAGCGG
GGGCATGGAGATCGGGGCGCTCACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGGGCCGAGGTGTGTGCCGAGCGCATCGAGGAGGTCCTGGCCACCGAGAGCAGTGTCGTGCCG
CCGGCCGAGCCGGTGGCCGAGCTGAAGCGGCGTGGCCATCTGGAGGTCCGGGGCGCGGACTTCCGCTACCCGGGTGCCGA
GGAATCGGTTTTGCGGGCTGTGGAGCTGGTGGCGCGGCCCGGTGAGACGACGGCGATCATCGGTTCGACGGGCAGCGGCA
AGTCGACCCTGCTGGGTCTGGTGCCGCGGCTGTTCGACGTGACCGGCGGCGAGGTGCTCGTCGACGGTGTGGACGTACGG
AAGCTGGACGCGGGCCTGATGGCGCGGACCGTCGGGCTCGTCCCGCAGAAGCCGTATCTGTTCTCCGGGACGGTGGCGAC
GAACCTGCGGTACGGAAAGCCCGACGCGACCGACGACGAGCTGTGGCACGCGCTCGAGGTCGCCCAGGCCGCAGACTTCG
TGAAGAAGCTGGAGAACGGGCTGAACGCACCGATCGCGCAGGGCGGCACGAACGTGTCCGGCGGGCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTCTTCGACGACTCGTTCTCCGCGCTCGACTACCAGACCGA
CGCCCTGCTGCGGGAAGCGCTCAAGGAGGAGACGGCGGACTCGACCGTCGTGATCGTCGCCCAGCGGGTGTCGACCATCC
GGGACGCCGACCGCATCGTGGTCCTCGACGAGGGCCGGGTCGTCGGCGCCGGGCGCCATCACGAGCTGATGGCGGGCAAT
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCAGCCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

41.281

97.4

0.402