Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   OG566_RS27370 Genome accession   NZ_CP108352
Coordinates   5915373..5917340 (-) Length   655 a.a.
NCBI ID   WP_329120861.1    Uniprot ID   -
Organism   Streptomyces sp. NBC_01353     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5910373..5922340
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OG566_RS27355 (OG566_27400) - 5910813..5912075 (+) 1263 WP_329120857.1 FAD-dependent oxidoreductase -
  OG566_RS27360 (OG566_27405) dnaG 5912219..5914141 (+) 1923 WP_329120859.1 DNA primase -
  OG566_RS27365 (OG566_27410) rpoS 5914251..5915366 (+) 1116 WP_329125677.1 RNA polymerase sigma factor Regulator
  OG566_RS27370 (OG566_27415) rcrQ 5915373..5917340 (-) 1968 WP_329120861.1 ABC transporter ATP-binding protein Regulator
  OG566_RS27375 (OG566_27420) rcrP 5917340..5919073 (-) 1734 WP_329120863.1 ABC transporter ATP-binding protein Regulator
  OG566_RS27380 (OG566_27425) - 5919164..5920603 (-) 1440 WP_329120865.1 FGGY family carbohydrate kinase -
  OG566_RS27385 (OG566_27430) - 5920709..5921011 (-) 303 WP_329120867.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 70327.79 Da        Isoelectric Point: 5.0578

>NTDB_id=659140 OG566_RS27370 WP_329120861.1 5915373..5917340(-) (rcrQ) [Streptomyces sp. NBC_01353]
MAGPGGRMMAGGGPDQRSMDFKGSGKRLMKQLAPERGALWLMLIACVLSVAASVVGPKILGKATDLVFAGVVGRGMTEGT
TKAQEIERLRAAGEGGMADMLSGVDFTPGQGIDFTAVGEVLLWVLVIYVAAGLLMLVSTRMSIKVINRTVYRMREDVQAK
LARLPLSYFDKAKRGEVLSRATNDIDNISQTLQQSMGQLINSLLTIVGVLAVMFWISPLLALVALVTVPVSVVVATKIGK
RSQPHFVQQWKSTGKLNAHVEEMYTGHALVKVFGRQDESAADFREQNDALYEAGFKAQFNSGVMQPVMFFVSNINYVLVA
VVGGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAEEQEPDASRSERSEIGGPSAGGW
GKPSESLGKVALEEVVFRYEPEKPLIENLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDISAMSRE
DLRSGIGMVLQDTWLFGGTIADNIAYGASRAVSREEIEEAARAAHADRFIRTLPDGYDTVIDDDGSGVSAGEKQLITIAR
AFLSDPVILVLDEATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEELLAASGAYA
RLYAAQFAQAVVEVD

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=659140 OG566_RS27370 WP_329120861.1 5915373..5917340(-) (rcrQ) [Streptomyces sp. NBC_01353]
ATGGCCGGTCCTGGCGGGCGAATGATGGCCGGTGGCGGCCCCGACCAGCGGTCGATGGACTTCAAGGGCTCCGGCAAGCG
GCTGATGAAGCAGCTGGCGCCCGAGCGGGGCGCGCTCTGGCTGATGCTGATCGCCTGCGTGCTCAGCGTGGCGGCCTCGG
TGGTCGGTCCGAAGATCCTCGGCAAGGCGACCGACCTGGTCTTCGCGGGCGTGGTCGGGCGCGGCATGACCGAGGGCACG
ACGAAGGCCCAGGAGATCGAGCGGCTTCGGGCGGCGGGCGAAGGCGGGATGGCCGACATGCTGTCCGGGGTCGACTTCAC
CCCCGGGCAGGGCATCGACTTCACGGCGGTCGGGGAGGTGCTGCTCTGGGTGCTCGTCATCTACGTGGCGGCCGGACTCC
TCATGCTGGTCTCGACCCGTATGTCCATCAAGGTGATCAACCGGACGGTCTACCGGATGCGCGAGGACGTCCAGGCGAAG
CTGGCGCGGCTGCCGCTGTCGTACTTCGACAAGGCCAAGCGCGGCGAGGTCCTCAGCCGGGCGACCAACGACATCGACAA
CATCTCGCAGACGCTCCAGCAGTCGATGGGGCAGCTGATCAACTCGCTGCTCACCATCGTCGGCGTGCTGGCCGTGATGT
TCTGGATCTCACCGCTGCTCGCGCTGGTCGCGCTGGTGACCGTGCCGGTGTCGGTGGTCGTGGCCACGAAGATCGGCAAG
CGTTCGCAGCCGCACTTCGTGCAGCAGTGGAAGTCCACGGGCAAGCTCAACGCCCATGTGGAGGAGATGTACACCGGCCA
CGCGCTGGTGAAGGTCTTCGGGCGGCAGGACGAGTCGGCGGCCGACTTCCGTGAGCAGAACGACGCGCTGTACGAGGCCG
GGTTCAAGGCACAGTTCAACAGCGGTGTCATGCAGCCGGTGATGTTCTTCGTCTCGAACATCAACTACGTCCTGGTGGCC
GTGGTCGGCGGCCTCCGGGTCGCGAGCGGCACGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCCCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCGTCGATGGCGAACCTGGTGCAGTCCGGGGTCGCCTCGGCCGAGCGGATCTTCGAGC
TCCTCGACGCCGAGGAGCAGGAGCCGGACGCGTCGAGGAGCGAGCGAAGCGAGATCGGGGGACCCTCGGCCGGAGGCTGG
GGGAAGCCCTCGGAGTCGCTCGGCAAGGTCGCTCTGGAGGAGGTGGTGTTCCGCTACGAGCCGGAGAAGCCGCTCATCGA
GAACCTGTCGCTGACGGTGGAGCCCGGCCAGACGGTCGCGATCGTCGGCCCGACCGGCGCCGGCAAGACCACGCTGGTGA
ACCTGCTGATGCGGTTCTACGAGGTGACCGGTGGACGGATCACCCTCGACGGCGTGGACATCTCGGCGATGTCCCGCGAG
GACCTCAGGTCCGGGATCGGCATGGTCCTCCAGGACACCTGGCTGTTCGGCGGCACGATCGCCGACAACATCGCCTACGG
CGCGTCCCGCGCGGTGTCCCGCGAGGAGATCGAGGAGGCGGCGCGGGCCGCGCACGCCGACCGGTTCATCCGCACCCTGC
CCGACGGCTACGACACCGTCATCGACGACGACGGCTCGGGCGTCAGCGCCGGGGAGAAGCAGCTGATCACCATCGCGCGG
GCGTTCCTGTCCGACCCCGTGATCCTGGTCCTGGACGAGGCGACCAGCTCGGTCGACACCCGTACCGAGGTCCTCATCCA
GAAAGCGATGGCGCGCCTGGCCCACGGGCGTACGTCGTTCGTGATCGCCCACCGCCTCTCCACCATCAGGGACGCGGACG
TGATCCTGGTGATGGAGAACGGCTCGATCGTCGAACAGGGCACGCACGAGGAGCTGTTGGCGGCGAGCGGCGCGTACGCG
CGGCTGTACGCGGCGCAGTTCGCGCAGGCGGTCGTCGAGGTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(40-351)

ABC transporter (ABC_tran)

(427-576)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.048

96.183

0.376